Conserved Protein Domain Family
lacto_ODC_hypo

?
TIGR04318: lacto_ODC_hypo 
putative ornithine decarboxylase
In at least ten species of Lactobacillus, this close homolog to known ornithine decarboxylase occurs in a three-gene neighborhood, along with an amino acid permease family transporter and pyridoxal phosphate-dependent enyzme from the cystathionine gamma-lyase family. Species include L. acidophilus, L. amylovorus, L. crispatus, L. delbrueckii, L. farciminis, L. helveticus, L. johnsonii, etc. The combination of a decarboxylase with an antiporter in a two-gene system suggests a decarboxylation/antiport proton-motive cycle for transient resistance to acidic conditions. The substrate for this decarboxylase might be ornithine but is unknown.
Statistics
?
PSSM-Id: 275122
Aligned: 7 rows
Threshold Bit Score: 1307.81
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_08548375    2 KKYLKIATPAKLQADVAKKWPTVELTPEVSGAKLAALVIEAGDLKQRALAELICQRSGLKIPLIEVTAENIDa---dMKR 78  Lactobacillus a...
ZP_08575748    1 MNFLKIAIGNDVIISDSTDFEIVSFTENATASELAAIVLNEHDQKNLSVAKNLQETSGLGIPIITTDGKTDV-----TVK 75  Lactobacillus f...
ZP_05862624    1 MTFLKIAVDSTIDLPQLSEWQQIPLTDIKNPAEIVAFIVNKNNPIKLATVQHLQKESGLPIPVIQVNSKVSSe---dIST 77  Lactobacillus j...
WP_003547166   1 MDFLKIAIGNNVSIDKLKDWTLVPIGQAENSAELAAIVIKQNDILAKLKADELKKQSGFPIPVIEVEQQVDSk---vKQD 77  Lactobacillus a...
WP_011475545   3 NKILKIGTTSTTEEYVPLPWLSSNVYSGITAAELAAFVLPKADEVAYQKAQELMAKDGLQVPVILVDAGESLskeelQNK 82  Lactobacillus s...
WP_004560911   1 MHYLKIAARKDLLPYLPKNWPIVELKENLNGAYLAAVVVRKDDSRGKGMHHFWADKLKLDLPLIVYDEKQNM-----IQI 75  Lactobacillus d...
WP_011543702   1 MHYLAIAAKKELLPYLPIDWPKTELTELVNPASLAAVVIDEKDSRSRGIYQTMKEKLGLDLPLIEFTPETS------PAE 74  Lactobacillus d...
ZP_08548375   79 VLESATAYEKENVPTFLLDLINFADEKAVSFTTPGHHNGNFYTRHPAGEVFKNFFGDNFLYADVSDTIPELGDTLTHGGT 158 Lactobacillus a...
ZP_08575748   76 ALQLANDYQTKMVPGFLSDLINFAEDKPISFTTPGHHNGQYYEKHPAGVVFNRFFGKNLMFADTSDTVAELGDTMTHEGT 155 Lactobacillus f...
ZP_05862624   78 IISAITEYINKNIPGYLRDLVNFAQDQPISFTTPGHHNGLYYDKHPAGVIMNKFFGKNLMYADTSDTVPELGDMMTHSGT 157 Lactobacillus j...
WP_003547166  78 IIQKAENYQHEMVPGFLTDLINFAQAKPISFTTPGHHNGQYLDLHPAGVVFNRFFGKNMMFADTSDTVPQLGDTMTHTGT 157 Lactobacillus a...
WP_011475545  83 VAQAAQQYEAENVPGFLRDLINFADEKPVSYTTPGHHNGQFYEKHPAGVVFKKFFGDNMLRADVSDTVAELGDTLTHGGT 162 Lactobacillus s...
WP_004560911  76 IDQTASQYEQEVIPKFLLDLTKFADQDDLILSTPGHHNGHFYDRHPAGAIMKSFFGPNFFKADVSDSVSELGDMMTHEGG 155 Lactobacillus d...
WP_011543702  75 ISRLAQTYEEANVPRFIRELTAFSDQDDLVFDTPGHHNGRFYDRHPAGAVLRNFFGDNYFRADTSDCVSELGDMMNHTGG 154 Lactobacillus d...
ZP_08548375  159 PLTAEKQAAKAFNADKVYFCTNGTTSSNTICATAALTEGDLVLFDRNNHKSLYNSALVMTGAKPVYLKTDRDPLGLIGPL 238 Lactobacillus a...
ZP_08575748  156 PLTAEQKAAQTYNADKVYFCTNGTTSSNSICASALLSEDDLVLFDRNNHKSLYNSALVMSGAKPVYVPTDRNPLGLIGEM 235 Lactobacillus f...
ZP_05862624  158 PLTAEQKAAQTYHADKVYFCTNGTTSANSICASAVLRKDDLVLFDRNNHKSLYNSALVMTGAKPVYIKTDRNPLGLIGEM 237 Lactobacillus j...
WP_003547166 158 PLDAEKKAAETYHADKVYFCTNGTTSANSICASALLSEGDLVLFDRNNHKSLYNSALVMSGAKPVYIPTDRNALGLIGEM 237 Lactobacillus a...
WP_011475545 163 PLDSEQEAAQAFNADKVYYVTNGTTSSNTICANAVLSEGDLVLFDRNNHKSLYNSALIMTGAKPVYLPTSRNPLGLIGPV 242 Lactobacillus s...
WP_004560911 156 PLKAEEEAAKAYNADKVYFCTNGTTSANTICAAAVLRRNDLVLFDRNNHKSLYNSALVMTGARPVYLPTDRNADGLIGPL 235 Lactobacillus d...
WP_011543702 155 PLEAQQEAAKAFNADKVYFCTNGTTSANTICTTALLDEDDLVLFDRNNHKSIYNSALVMTGAKPVYLPTDRNADGLIGPL 234 Lactobacillus d...
ZP_08548375  239 VGEELDEKKIRQQIALVDPKKAKAKRPFRLAVLQLETYDGVFYDARYLIKKLGPLCDYILFDCAWGGYEQFVDLMKELSP 318 Lactobacillus a...
ZP_08575748  236 NPEALDEDKLRKEISKVDPKRAQAKRPFRLAILQLETYDGVFYDAQWIIDKIGHLCDYILFDCAWGGFEQFVPIMKHLSP 315 Lactobacillus f...
ZP_05862624  238 DPECLNEDYLRREATKIDPVKAKQKRPFRMAVVQAETYDGVFYDAKWIVDKIGKLCDYILFDCAWGGFEEFIPIMEHLSP 317 Lactobacillus j...
WP_003547166 238 DPDFLTEDKIRAEIAKVDPKKAKLKRPFRLAIVQAETYDGIFYDAKWILDRIGKLCDYILFDCAWGGFEEFVPIMKHLSP 317 Lactobacillus a...
WP_011475545 243 ISDDLDEEKIRAEIAKVDPERAKAKRPFRMAVLQLETFDGVFYNAKWLLDKIGKLCDYVLFDCAWGGYEQFVNIMKQLSP 322 Lactobacillus s...
WP_004560911 236 VADDLDEDKIRTEIAKIDPERAQAKRPFRMAVLQLETYDGVFYNAKYIIKKLGKLCDYILFDCAWGGYEQFVNVLRDLSP 315 Lactobacillus d...
WP_011543702 235 TAASLDEDLIRREIAKVAPGRAKADRPFRLAVLQLETYDGIFYDAKLILKKLGRLCDYILFDCAWGGYEQFVDVLRDFSP 314 Lactobacillus d...
ZP_08548375  319 LSLEYGPADPGILVTQSVHKQQAGVAQTSQILKKDAHLKGQKRYIDHKHFNNAYLKYVTTSYSYPIYASLAVNAAMAASS 398 Lactobacillus a...
ZP_08575748  316 LSLEYGPDDPGILVTQSLHKQQAGLAQTSQILKKDAHLKGQARYVDHKHFNNAYLKFVTSSYSYPIYASLTVNAYLTAGQ 395 Lactobacillus f...
ZP_05862624  318 LLLDLSPEDPGILVTQSLHKQQAGMAQTSQILKKDSHIKGQKRYVDHKHFNHAYLKFVTSSYSYPIYASLVANTYLVSGP 397 Lactobacillus j...
WP_003547166 318 LLLNLGPDDPGILVTQSLHKQQVGMAQASQILKKDSHIQGQKRYVDHKHFNHEYLKFVTSSYAYPLYASLTVNSYVTAGE 397 Lactobacillus a...
WP_011475545 323 LQYQYTADDPGILVTQSIHKQQAGLAQTSQILKKDAHIKGQKRYVDHKHFNNAYLKYVTTSYSYPIYASLTVNTALAKGE 402 Lactobacillus s...
WP_004560911 316 MQLTYGPDDPGILVTQSIHKQQVGVSQASQILKKDSHLKGQKRYVNHKHFNHAYLKYVTTSCSYPIYSSLVVNAKMANSP 395 Lactobacillus d...
WP_011543702 315 FQQTYGPDDPGILVTQSVHKQQAGVGQASQILKKDSHIKGQKRYVDHKHFNHAYMKYVTTSYSYPVYASLVANSAMAASP 394 Lactobacillus d...
ZP_08548375  399 ANHAWWEETLVKGIEFRKTLLRQSKLFKPLVPtkingISWENIPTEKLAADLSLWQLDPKDTWHGFSKVALGEAIISPLK 478 Lactobacillus a...
ZP_08575748  396 GNKNWWDETLRLGIEWRKQLLQKSKLFKPLVP-----DNFLQISTDDLATHSEYWNLKSSDNWHGFKKIADGQAMIDPLK 470 Lactobacillus f...
ZP_05862624  398 GNQKWWDDTLRMGIEWRKKLLGKSKLFKPLVC-----DNFVQIPTEKLMTNSKYWNLSPTDTWHGFNRITSGEAMIDPMK 472 Lactobacillus j...
WP_003547166 398 GNKKWWDEILRMGIEWRKELLKKSKLFKPFVP-----VNFLDIPTNELATNAKYWNMSKEDNWHGFTKMGKGEAMIDPLK 472 Lactobacillus a...
WP_011475545 403 APKKWWEEAMRKGIRFRKALNQKSKLFKTLNA-----QEINEKSEQELMDNLSYWKMEETDDWHGFKGIAKDEAIISPLK 477 Lactobacillus s...
WP_004560911 396 ACQTWWNDTVKLSIEFRRKLLRHSKLFRPLVPktvnnQKWEDIPTDVLARDINAWKLKPTDKWHGFEKIENDEVALSPLK 475 Lactobacillus d...
WP_011543702 395 AVNSWWNDTVKLGIDFRKRLLKESKLFKPLVPptvhgQKWENLPTDVLSQDPEAWKLSPDDDWHGFKLLAPGEVALSPVK 474 Lactobacillus d...
ZP_08548375  479 LTITSPGVELKTGKYTETGIPSPLVGEFLLEKRIIPGKADLYSTLFFLTPGEDELSLQTLLTALLEFERLYLTDAPLEKA 558 Lactobacillus a...
ZP_08575748  471 ITVITPGVDIKNAQYQDSGIPGPVVAEFLMEKRIIRAKDDLNSLLFLLTPGDSREELDILLEAFLEFERLYLADAPLTEV 550 Lactobacillus f...
ZP_05862624  473 ITVVTPGIDITNNKYENDGIPGPIVAEFLMEKRIIRAKNDLNSLLFLLTPGDRQTDLDALLDAFLEFEKFYFEDAPLEKV 552 Lactobacillus j...
WP_003547166 473 ITVKTPGIDVQNAKYEETGIPGAVVAEFLMENHIIRAKNDLNSLLFLLTPGDTKEELDTLLDAFLKFEKYYNDDGLVKDV 552 Lactobacillus a...
WP_011475545 478 LTVVCPGINLATGKYEETGIPGKVIGEYLTEKRVITCKSDLYSTLFLLTPGERDADLEALLTSFLEFEEYYLRDAPLEQV 557 Lactobacillus s...
WP_004560911 476 LTIINPGVDLATAKFTKEGIPGVILETYLHEKHIIPEKADIYSTLYLITPGETEVDMETLYTALMDFEKAYLNNEPLKQV 555 Lactobacillus d...
WP_011543702 475 VTLMTPGIDLAKAAFTEEGIPGAIVSLYLHEKHIIPEKSDSYSTLYLLTPGEGQVDMNGLFSTLMAFEEAYLTKAPLSAI 554 Lactobacillus d...
ZP_08548375  559 LPRFYRQNKERYAGYTLRQLCQEMHEYFKEQEIYHLQQALFIKPELQAYSCLPRTADLAFMRGQGKLVPLDEIEGKVALE 638 Lactobacillus a...
ZP_08575748  551 LPRLAQQYPKRYQGYTLKQLCQEMHDYYRQNKTFTLQKELFAKKDMQNYEMTPAQADRLFMKNQSELVDLKDIKGRIAVE 630 Lactobacillus f...
ZP_05862624  553 VPKLAKEYTTRYRGYTLKQLCHEMHSYYATHQTFKLQKALFEKENMQNYSMIPSEADNLFMHNESKLISLKDVVGQIAAE 632 Lactobacillus j...
WP_003547166 553 LPVLYKEYPDRYKGYTVKHLCQEMHEYYKENNTFVLQQELFEKPGMQDYKMTPAEADQMFKRNENKVVNLEDVVGETAAE 632 Lactobacillus a...
WP_011475545 558 LPRLVKQNPERYQGYTIRQLCQEMHEYYAKNEIYKLQQDLFLKKTFQDYEMTPAEADKLFMKNEGELVDLDEIEGRVALE 637 Lactobacillus s...
WP_004560911 556 MPQLSNAFPDRYSNYTLHDLCQEMHEYYRSNHIFDLEKQLFIKNDFQKYVMTPAKADEEFNRNNSKLVEVDNLTDEIALE 635 Lactobacillus d...
WP_011543702 555 MPELVAQYPNRYEGYTLYQLCQELHHYYQEHEIFKLQQALFLKDSFQNYELTPKEADREFVHGNSELVKLADAKGRMALE 634 Lactobacillus d...
ZP_08548375  639 GALPYPPGVFIVAPGERWQALDAEYFKVLLGAMENFPGFEPEIQGIYLEWDDSGHLSAAGYVL 701 Lactobacillus animalis KCTC 3501
ZP_08575748  631 GALPYPPGVFIVAPGEKWQDVDLKYFEDLVGAIERFPGFVPEIQGVYWDKNADGTISVQAEVL 693 Lactobacillus farciminis KCTC 3681
ZP_05862624  633 GALPYPPGVFIVAPGEKWQEIDKEYFEVLVGAMENFPGFVPEIQGVYWTQGTNGKINVEVEVL 695 Lactobacillus jensenii 115-3-CHN
WP_003547166 633 GALPYPPGVFIVAPGEKWGTIDQKYFEVLAHAIEKFPGFVPEIQGVYLDQNADGTLRVQAEVI 695 Lactobacillus acidophilus
WP_011475545 638 GALPYPPGVFIVAPGEKWQKIDVDYFKILMGAIDKFPGFDPEIQGVYLDK-DTGVTKAQGFVL 699 Lactobacillus salivarius
WP_004560911 636 GALPYPPGVFIVAPGERWHKIDIDYFKVLLTAAKKFPGFEPEVQGVY---EQNG--RIVAEVL 693 Lactobacillus delbrueckii
WP_011543702 635 GALPYPPGVFIVAPGERWQDLDVAYFQVLIGAARKFPGLDPEIQGVY---QEDG--EVWAEVL 692 Lactobacillus delbrueckii
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap