|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
3-208 |
5.63e-68 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 214.32 E-value: 5.63e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 3 IQGRFAANMGETAYENWIKPVRAVKVDlaNRTVELQAPNDIVMQAWdNGNYTAKFMEYAYDVAHDFFKPELKVIKVVANP 82
Cdd:TIGR00362 4 ILERLEKELSEQEYNTWFKPLKLLSIE--GNTLIISVPNEFVKEWI-EKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 83 VNNQKS----NQSNSDFVATDYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 158
Cdd:TIGR00362 81 EPNSKKpepaPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 59896645 159 LKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQ 208
Cdd:TIGR00362 161 ILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 210
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
3-210 |
1.58e-63 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 201.90 E-value: 1.58e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 3 IQGRFAANMGETAYENWIKPVRAVKVDlaNRTVELQAPNDIVMQaWDNGNYTAKFMEYAydvahdffkpelkvikvvanp 82
Cdd:PRK00149 9 VLERLKDELSEQEYETWIKPLKALSLE--DNTLTLYVPNRFVKD-WIEKNYLDLIEEAL--------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 83 vnnqksnqsnsdfvatdyQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKEL 162
Cdd:PRK00149 65 ------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 59896645 163 QPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:PRK00149 127 NPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFL 174
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
102-210 |
3.03e-55 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 177.69 E-value: 3.03e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIVRYITTDDFMNDWV 181
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100
....*....|....*....|....*....
gi 59896645 182 NAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFL 109
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
102-210 |
7.59e-47 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 153.64 E-value: 7.59e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIVRYITTDDFMNDWV 181
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100
....*....|....*....|....*....
gi 59896645 182 NAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFL 109
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
117-210 |
2.27e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.16 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 117 NELATSAAMAVSEQPgrQYNPLLIYGSSGLGKTHLMEAIGNRLKElqPDAIVRYITTDDFMNDWVNAISKKTTADFTST- 195
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFe 78
|
90
....*....|....*...
gi 59896645 196 ---YENVDLLLVDDIQML 210
Cdd:cd00009 79 laeKAKPGVLFIDEIDSL 96
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
133-210 |
9.54e-09 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 53.63 E-value: 9.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 133 RQYNpLLIYGSSGLGKTHLMEAIGNRlkelqpdAI-----VRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDI 207
Cdd:NF038214 89 RAEN-VLLLGPPGTGKTHLAIALGYA-------ACrqgyrVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
...
gi 59896645 208 QML 210
Cdd:NF038214 161 GYL 163
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
136-210 |
3.65e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.75 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 136 NPLLIYGSSGLGKTHLMEAIGNRLKelQPDAIVRYITTDDFMNDWVNAISKKTTADFTST---------------YENVD 200
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90
....*....|
gi 59896645 201 LLLVDDIQML 210
Cdd:smart00382 81 VLILDEITSL 90
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
3-208 |
5.63e-68 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 214.32 E-value: 5.63e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 3 IQGRFAANMGETAYENWIKPVRAVKVDlaNRTVELQAPNDIVMQAWdNGNYTAKFMEYAYDVAHDFFKPELKVIKVVANP 82
Cdd:TIGR00362 4 ILERLEKELSEQEYNTWFKPLKLLSIE--GNTLIISVPNEFVKEWI-EKNYLDLIEELLQELFGAEIEIEFTVGEDEEEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 83 VNNQKS----NQSNSDFVATDYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNR 158
Cdd:TIGR00362 81 EPNSKKpepaPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 59896645 159 LKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQ 208
Cdd:TIGR00362 161 ILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ 210
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
3-210 |
1.58e-63 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 201.90 E-value: 1.58e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 3 IQGRFAANMGETAYENWIKPVRAVKVDlaNRTVELQAPNDIVMQaWDNGNYTAKFMEYAydvahdffkpelkvikvvanp 82
Cdd:PRK00149 9 VLERLKDELSEQEYETWIKPLKALSLE--DNTLTLYVPNRFVKD-WIEKNYLDLIEEAL--------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 83 vnnqksnqsnsdfvatdyQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKEL 162
Cdd:PRK00149 65 ------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK 126
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 59896645 163 QPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:PRK00149 127 NPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFL 174
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
102-210 |
3.03e-55 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 177.69 E-value: 3.03e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIVRYITTDDFMNDWV 181
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100
....*....|....*....|....*....
gi 59896645 182 NAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFL 109
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
102-210 |
7.59e-47 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 153.64 E-value: 7.59e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIVRYITTDDFMNDWV 181
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100
....*....|....*....|....*....
gi 59896645 182 NAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFL 109
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
99-210 |
1.83e-37 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 136.88 E-value: 1.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 99 DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIVRYITTDDFMN 178
Cdd:PRK14086 278 TARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN 357
|
90 100 110
....*....|....*....|....*....|..
gi 59896645 179 DWVNAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:PRK14086 358 EFINSIRDGKGDSFRRRYREMDILLVDDIQFL 389
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
86-210 |
2.67e-15 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 73.72 E-value: 2.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 86 QKSNQSNSDFVATDYQLNQNFTFDTWVIGDANELATSAAMAVSEQP----GRQYNPLLIYGSSGLGKTHLMEAIGNRLKE 161
Cdd:PRK12422 88 QIQQEKTAYFTMKYGELDPLMTFANFLVTPENDLPHRILQEFTKVSeqgkGFPFNPIYLFGPEGSGKTHLMQAAVHALRE 167
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 59896645 162 LQPDAIvrYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQML 210
Cdd:PRK12422 168 SGGKIL--YVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVF 214
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
138-207 |
1.51e-13 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 67.11 E-value: 1.51e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 138 LLIYGSSGLGKTHLMEAIGNRLKELQPDaiVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDI 207
Cdd:COG1484 102 LILLGPPGTGKTHLAIALGHEACRAGYR--VRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDEL 169
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
117-210 |
2.27e-12 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 62.16 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 117 NELATSAAMAVSEQPgrQYNPLLIYGSSGLGKTHLMEAIGNRLKElqPDAIVRYITTDDFMNDWVNAISKKTTADFTST- 195
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFe 78
|
90
....*....|....*...
gi 59896645 196 ---YENVDLLLVDDIQML 210
Cdd:cd00009 79 laeKAKPGVLFIDEIDSL 96
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
133-210 |
9.54e-09 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 53.63 E-value: 9.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 133 RQYNpLLIYGSSGLGKTHLMEAIGNRlkelqpdAI-----VRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDI 207
Cdd:NF038214 89 RAEN-VLLLGPPGTGKTHLAIALGYA-------ACrqgyrVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
...
gi 59896645 208 QML 210
Cdd:NF038214 161 GYL 163
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
136-210 |
3.65e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 47.75 E-value: 3.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 136 NPLLIYGSSGLGKTHLMEAIGNRLKelQPDAIVRYITTDDFMNDWVNAISKKTTADFTST---------------YENVD 200
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90
....*....|
gi 59896645 201 LLLVDDIQML 210
Cdd:smart00382 81 VLILDEITSL 90
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
105-207 |
1.03e-06 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 47.71 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 105 NFTFDTWVIGDANELATSAAMAVS---EQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLkeLQPDAIVRYITTDDFMNDWV 181
Cdd:PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVkkfEEMKKENVGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNFPQLLNRIK 158
|
90 100
....*....|....*....|....*....
gi 59896645 182 NAISKKTTAD---FTSTYENVDLLLVDDI 207
Cdd:PRK08116 159 STYKSSGKEDeneIIRSLVNADLLILDDL 187
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
102-209 |
1.66e-05 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 44.37 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 102 LNQNFTFDTWVIGDANEL-ATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLkeLQPDAIVRYITTDDFMNDW 180
Cdd:PRK07952 65 LHQNCSFENYRVECEGQMnALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITVADIMSAM 142
|
90 100 110
....*....|....*....|....*....|.
gi 59896645 181 VNAISKKTTAD--FTSTYENVDLLLVDDIQM 209
Cdd:PRK07952 143 KDTFSNSETSEeqLLNDLSNVDLLVIDEIGV 173
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
107-208 |
1.85e-05 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 44.10 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 107 TFDTWvIGDANELATSAAMAVSEQPGRQynPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIvrYITTDDFmndwvnaisK 186
Cdd:TIGR03420 13 TFDNF-YAGGNAELLAALRQLAAGKGDR--FLYLWGESGSGKSHLLQAACAAAEERGKSAI--YLPLAEL---------A 78
|
90 100
....*....|....*....|..
gi 59896645 187 KTTADFTSTYENVDLLLVDDIQ 208
Cdd:TIGR03420 79 QADPEVLEGLEQADLVCLDDVE 100
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
138-207 |
2.69e-05 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 43.74 E-value: 2.69e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 59896645 138 LLIYGSSGLGKTHLMEAIGNRLkeLQPDAIVRYITTDDFMNDW-VNAISKKTTADFTSTY-ENVDLLLVDDI 207
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADELIEILrEIRFNNDKELEEVYDLlINCDLLIIDDL 255
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
3-53 |
8.31e-05 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 39.19 E-value: 8.31e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 59896645 3 IQGRFAANMGETAYENWIKPVRAVKVDlANRTVELQAPNDIVMQaWDNGNY 53
Cdd:pfam11638 7 VLERLRKEVGEQTFNTWIKPLTLVDLD-DGGSLTLSVPNRFVRD-WVEEHY 55
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| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
112-209 |
2.37e-04 |
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putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 40.97 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 59896645 112 VIGDANELATSAAMAVSEQPGRQYNPLLIYGSSGLGKTHLMEAIGNRLkeLQPDAIVRYITTDDFMNDWVNAI-SKKTTA 190
Cdd:PRK12377 78 VQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVPDVMSRLHESYdNGQSGE 155
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90
....*....|....*....
gi 59896645 191 DFTSTYENVDLLLVDDIQM 209
Cdd:PRK12377 156 KFLQELCKVDLLVLDEIGI 174
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| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
130-207 |
3.67e-04 |
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primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 40.62 E-value: 3.67e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 59896645 130 QPGRQYNPLLIYGSSGLGKTHLMEAIGNRLKELQPDAIVRYITTddFMNDWVNAISKKTTADFTSTYENVDLLLVDDI 207
Cdd:PRK08939 151 PPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
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| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
105-177 |
9.18e-03 |
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transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 36.22 E-value: 9.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 59896645 105 NFTFDTWVigDANELATSAAMAVSEqpgRQYNPLLIyGSSGLGKTHLMEAIGNRlkELQPDAIVRYITTDDFM 177
Cdd:PRK09183 78 DFTFATGA--PQKQLQSLRSLSFIE---RNENIVLL-GPSGVGKTHLAIALGYE--AVRAGIKVRFTTAADLL 142
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