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Conserved domains on  [gi|2431123110|gb|WCB27207|]
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chaperone protein DnaJ, partial [Lelliottia amnigena]

Protein Classification

molecular chaperone DnaJ( domain architecture ID 11484931)

molecular chaperone DnaJ, part of the DnaK-DnaJ-GrpE system, prevents the aggregation of unfolded substrate and acts primarily by stimulating the ATPase activity of Hsp70

CATH:  2.10.230.10
Gene Ontology:  GO:0051082|GO:0009408|GO:0005524|GO:0006457
PubMed:  8016869|15063739|19060069
SCOP:  4002149|4003813

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 1-235 1.84e-173

chaperone protein DnaJ; Provisional


:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 481.57  E-value: 1.84e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK10767  131 RGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKE 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:PRK10767  211 KTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRV 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGptGEKNSPRSKSFF 235
Cdd:PRK10767  291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEESFES--GEKHSPKSKGFF 363
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 1-235 1.84e-173

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 481.57  E-value: 1.84e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK10767  131 RGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKE 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:PRK10767  211 KTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRV 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGptGEKNSPRSKSFF 235
Cdd:PRK10767  291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEESFES--GEKHSPKSKGFF 363
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 1-219 1.72e-115

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 333.80  E-value: 1.72e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGR 76
Cdd:TIGR02349 132 FGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQgtpfGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGR 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  77 LEKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTL 156
Cdd:TIGR02349 212 VKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTL 291

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2431123110 157 DGRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESF 219
Cdd:TIGR02349 292 DGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEAS 354
DnaJ_C pfam01556
DnaJ C terminal domain; This family consists of the C terminal region of the DnaJ protein. It ...
 1-201 5.45e-90

DnaJ C terminal domain; This family consists of the C terminal region of the DnaJ protein. It is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. The two C-terminal domains CTDI and CTDII, both incorporated in this family are necessary for maintaining the J-domains in their specific relative positions. Structural analysis of PDB:1nlt shows that PF00684 is nested within this DnaJ C-terminal region.


Pssm-ID: 460251 [Multi-domain]  Cd Length: 213  Bit Score: 264.12  E-value: 5.45e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKt 80
Cdd:pfam01556  14 FGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQFGFFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEK- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:pfam01556  93 KTLEVKIPAGVDDGQRIRLRGEGDAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGKV 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETP 201
Cdd:pfam01556 173 KLKIPAGTQPGTVLRLKGKGMPRLKGGGRGDLYVTVKVEVP 213
DnaJ_C cd10747
C-terminal substrate binding domain of DnaJ and HSP40; The C-terminal region of the DnaJ/Hsp40 ...
 76-204 1.31e-63

C-terminal substrate binding domain of DnaJ and HSP40; The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.


Pssm-ID: 199909 [Multi-domain]  Cd Length: 158  Bit Score: 194.95  E-value: 1.31e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  76 RLEKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPT 155
Cdd:cd10747    30 RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2431123110 156 LDGRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSL 204
Cdd:cd10747   110 LGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEVKVEFPKKL 158
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 1-235 1.84e-173

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 481.57  E-value: 1.84e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK10767  131 RGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKE 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:PRK10767  211 KTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRV 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGptGEKNSPRSKSFF 235
Cdd:PRK10767  291 KLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEESFES--GEKHSPKSKGFF 363
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 1-219 1.72e-115

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 333.80  E-value: 1.72e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGR 76
Cdd:TIGR02349 132 FGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQgtpfGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGR 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  77 LEKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTL 156
Cdd:TIGR02349 212 VKERKTITVKIPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTL 291

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2431123110 157 DGRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESF 219
Cdd:TIGR02349 292 DGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEAS 354
PRK14280 PRK14280
molecular chaperone DnaJ;
2-235 7.66e-104

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 305.11  E-value: 7.66e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14280  133 GKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQntpfGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14280  213 RKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLH 292

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKElqesFGGPTGEKNSPRSKSFF 235
Cdd:PRK14280  293 GKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLRE----FAELSGEEIDEQPSSFF 366
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 2-235 1.75e-95

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 284.39  E-value: 1.75e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14277  145 GTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQntpfGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14277  225 RRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLD 304

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGPTGEKNsprsKSFF 235
Cdd:PRK14277  305 GKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSGEEGTESR----KSFF 378
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 2-232 6.04e-94

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 279.73  E-value: 6.04e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKTK 81
Cdd:PRK14294  134 GTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSK 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  82 TLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVN 161
Cdd:PRK14294  214 TVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERE 293

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2431123110 162 LKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGPTGEK--NSPRSK 232
Cdd:PRK14294  294 LKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFARLESEKIGNKlrNLFKSK 366
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 2-235 3.03e-92

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 275.57  E-value: 3.03e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQV-QIRQ---GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14298  131 GVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVtTTRStplGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14298  211 RKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLY 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGPTGEKNSPRSKSFF 235
Cdd:PRK14298  291 GKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREFDELSNGKNPSKAGKKKKGIF 368
DnaJ_C pfam01556
DnaJ C terminal domain; This family consists of the C terminal region of the DnaJ protein. It ...
 1-201 5.45e-90

DnaJ C terminal domain; This family consists of the C terminal region of the DnaJ protein. It is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. The two C-terminal domains CTDI and CTDII, both incorporated in this family are necessary for maintaining the J-domains in their specific relative positions. Structural analysis of PDB:1nlt shows that PF00684 is nested within this DnaJ C-terminal region.


Pssm-ID: 460251 [Multi-domain]  Cd Length: 213  Bit Score: 264.12  E-value: 5.45e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKt 80
Cdd:pfam01556  14 FGCTKKIKITRNVICDTCGGSGAKPGTSPKTCPCCGGGGQVRRQFGFFSTCTCCPCCGGGGKIIDKCCKCCGGGGVVEK- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:pfam01556  93 KTLEVKIPAGVDDGQRIRLRGEGDAGENGGPPGDLYVVIRVKPHPVFRRDGDDLYCTVPISLTEALLGGTIEVPTLDGKV 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETP 201
Cdd:pfam01556 173 KLKIPAGTQPGTVLRLKGKGMPRLKGGGRGDLYVTVKVEVP 213
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 2-235 2.05e-89

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 268.49  E-value: 2.05e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14276  136 GKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTqtplGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHE 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14276  216 KQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVH 295

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKElqesFGGPTGEKN-SPRSKSFF 235
Cdd:PRK14276  296 GDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKA----FAKASGEKDvNPKKKGFF 370
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 2-235 4.68e-87

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 262.45  E-value: 4.68e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQV-QIRQ---GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14283  136 GVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVkQVRNtilGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVV 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14283  216 RETKTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTID 295

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKElqesFGGPTGEKNSPRSKSFF 235
Cdd:PRK14283  296 GPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLRE----FASISGDEIHHVKKGLF 369
PRK14297 PRK14297
molecular chaperone DnaJ;
2-235 7.13e-84

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 254.32  E-value: 7.13e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14297  138 GVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRntplGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKV 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14297  218 RKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVD 297

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGgptGEKNSPRSKSFF 235
Cdd:PRK14297  298 GEVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASG---ETVDGKEKKTIF 372
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 1-217 1.26e-79

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 243.50  E-value: 1.26e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK14301  133 KGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQT 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:PRK14301  213 RELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPV 292

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQE 217
Cdd:PRK14301  293 TLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFEA 349
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 2-227 7.44e-79

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 241.45  E-value: 7.44e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14287  128 GKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQntpfGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKV 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14287  208 RKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLN 287

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGPTGEKN 227
Cdd:PRK14287  288 GKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREFAGMSGGRPDEQN 357
PRK14279 PRK14279
molecular chaperone DnaJ;
1-231 4.56e-78

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 240.02  E-value: 4.56e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK14279  162 KGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRT 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:PRK14279  242 RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPV 321

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSvRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESfggptgEKNS---PRS 231
Cdd:PRK14279  322 GVKVPAGTADGRILRVRGRGVPK-RSGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA------ERASgfdPRA 388
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 2-217 8.02e-78

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 238.76  E-value: 8.02e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKTK 81
Cdd:PRK14300  135 GIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQR 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  82 TLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD-GRV 160
Cdd:PRK14300  215 NLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEgGKV 294

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQE 217
Cdd:PRK14300  295 NLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351
PRK14295 PRK14295
molecular chaperone DnaJ;
1-234 2.08e-76

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 235.51  E-value: 2.08e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK14295  155 DGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSS 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGR- 159
Cdd:PRK14295  235 RTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPp 314

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110 160 VNLKVPGETQTGKLFRMRGRGVKSvRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESfggpTGEKNsPRSKSF 234
Cdd:PRK14295  315 VTVKLPPGTPNGRVLRVRGKGAVR-KDGTRGDLLVTVEVAVPKDLSGKAREALEAFREA----TADED-PRAELF 383
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 2-235 3.15e-76

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 234.88  E-value: 3.15e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKTK 81
Cdd:PRK14286  140 GREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRR 219

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  82 TLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGR-V 160
Cdd:PRK14286  220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKkA 299

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKElqesFGGPTGEKNS-PRSKSFF 235
Cdd:PRK14286  300 KMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEE----FARESGENIPgSKGKIFT 371
PRK14293 PRK14293
molecular chaperone DnaJ;
2-224 4.41e-75

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 231.80  E-value: 4.41e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVqiRQ------GFFAVQQACPHCHGRGTLIKDPCNKCHGHG 75
Cdd:PRK14293  133 GGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQV--RRatrtpfGSFTQVSECPTCNGTGQVIEDPCDACGGQG 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  76 RLEKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPT 155
Cdd:PRK14293  211 VKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDT 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2431123110 156 LDGRVNLKVPGETQTGKLFRMRGRGVKsvRGG---AQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGPTG 224
Cdd:PRK14293  291 VDGPVELTIPAGTQPNTVLTLENKGVP--RLGnpvARGDHLITVKVKIPTRISDEERELLEKLAKIKGERQG 360
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 1-234 4.61e-72

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 224.72  E-value: 4.61e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK14284  147 KGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDK 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTL--DG 158
Cdd:PRK14284  227 RSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLlkEG 306

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2431123110 159 RVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKElqesFGGPTGEKNSPRSKSF 234
Cdd:PRK14284  307 TCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQ----FAATEKAENFPKKRSF 378
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 2-217 5.14e-71

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 221.46  E-value: 5.14e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQ----QACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14278  129 GVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQvmtsRPCPTCRGVGEVIPDPCHECAGDGRV 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTL- 156
Cdd:PRK14278  209 RARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAIl 288

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2431123110 157 DGRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQE 217
Cdd:PRK14278  289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLRELKA 349
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 1-217 2.83e-64

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 204.23  E-value: 2.83e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGtLIKDPCNKCHGHGRLEKT 80
Cdd:PRK14291  145 TGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKK 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG-R 159
Cdd:PRK14291  224 ETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGkK 303

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2431123110 160 VNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPvSLND---------KQKQLLKELQE 217
Cdd:PRK14291  304 EKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVP-KISMlsklmgdgkKAKKLLKELDK 369
DnaJ_C cd10747
C-terminal substrate binding domain of DnaJ and HSP40; The C-terminal region of the DnaJ/Hsp40 ...
 76-204 1.31e-63

C-terminal substrate binding domain of DnaJ and HSP40; The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70.


Pssm-ID: 199909 [Multi-domain]  Cd Length: 158  Bit Score: 194.95  E-value: 1.31e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  76 RLEKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPT 155
Cdd:cd10747    30 RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPT 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2431123110 156 LDGRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSL 204
Cdd:cd10747   110 LGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVEVKVEFPKKL 158
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 1-235 3.38e-62

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 199.26  E-value: 3.38e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   1 RGVTKEIRIPTLEECDICHGSGAKVGtKPQTCPTCHGSGQVqiRQ------GFFAVQQACPHCHGRGTLIKDPCNKCHGH 74
Cdd:PRK14281  152 KGVEKTLKIKKQVPCKECNGTGSKTG-ATETCPTCHGSGEV--RQasktmfGQFVNITACPTCGGEGRVVKDRCPACYGE 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  75 GRLEKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVP 154
Cdd:PRK14281  229 GIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVP 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110 155 TLDGRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFGGPTGEKNSPRSKSF 234
Cdd:PRK14281  309 TLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKELKKSSHISPNAHNDKEEKSF 388


                  .
gi 2431123110 235 F 235
Cdd:PRK14281  389 F 389
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 13-215 1.89e-58

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 188.85  E-value: 1.89e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  13 EECDICHGSGAKVGTKPQTCPTCHGSGQV-QIRQGFFAV---QQACPHCHGRGTLIKDPCNKCHGHGRLEKTKTLSVKIP 88
Cdd:PRK14282  153 ETCPHCGGTGVEPGSGYVTCPKCHGTGRIrEERRSFFGVfvsERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIP 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  89 AGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVN-LKVPGE 167
Cdd:PRK14282  233 AGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTmLKIPPG 312

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2431123110 168 TQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKEL 215
Cdd:PRK14282  313 TQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 6-235 2.54e-58

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 188.56  E-value: 2.54e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   6 EIRIPTLEECDICHGSGAKVGTKP-QTCPTCHGSGQVQIR-QGFFAV---QQACPHCHGRGTLIKDPCNKCHGHGRLEKT 80
Cdd:PRK14292  133 EVEVDRLTECEHCHGSRTEPGGKPpKTCPTCRGAGAVRAQaRTIFGVvetQQPCPTCRGEGQIITDPCTVCRGRGRTLKA 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  81 KTLSVKIPAGVDTGDRIRLAGEGEAGEQGaqSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRV 160
Cdd:PRK14292  213 ETVKVKLPRGIDEGYRIRVAGMGNEGPGG--NGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ 290

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLkelqESFGGPTGEKNSPRSKSFF 235
Cdd:PRK14292  291 VIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL----EAYARAVGDEVPEPHEGLF 361
PRK14289 PRK14289
molecular chaperone DnaJ;
2-218 3.50e-58

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 188.89  E-value: 3.50e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQV-QIRQGFFAVQQA---CPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14289  144 GVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVtRVQNTILGTMQTqstCPTCNGEGKIIKKKCKKCGGEGIV 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14289  224 YGEEVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTID 303

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQES 218
Cdd:PRK14289  304 GKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 2-215 2.83e-54

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 178.20  E-value: 2.83e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGtKPQTCPTCHGSGQVQIR--QGFF--AVQQACPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14290  139 GTEKRIKYRRNAMCPDCSGTGAKNG-KLITCPTCHGTGQQRIVrgQGFFrmVTVTTCRTCGGRGRIPEEKCPRCNGTGTV 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAgeQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK14290  218 VVNEDISVKIPKGATDNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFR 295

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKEL 215
Cdd:PRK14290  296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 2-215 1.90e-48

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 162.85  E-value: 1.90e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKTK 81
Cdd:PRK14285  136 GYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKE 215

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  82 TLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGR-V 160
Cdd:PRK14285  216 TIELKIPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKkI 295

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKEL 215
Cdd:PRK14285  296 KIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 2-217 1.55e-45

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 155.49  E-value: 1.55e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ--GFFAVQQA--CPHCHGRGTLIKDPCNKCHGHGRL 77
Cdd:PRK14296  139 GVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKnmGFFQFQQSakCNVCNGAGKIIKNKCKNCKGKGKY 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNN-LYCEVPINFAMAALGGEIEVPTL 156
Cdd:PRK14296  219 LERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNdILMTYNISYLDAILGNEIIIKTL 298

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2431123110 157 DGRVNLKVPGETQTGKLFRMRGRGV-KSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQE 217
Cdd:PRK14296  299 DGDIKYKLPKSINSNELIIINNKGLyKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYE 360
PRK14288 PRK14288
molecular chaperone DnaJ;
2-220 6.01e-44

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 151.38  E-value: 6.01e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKvGTKPQTCPTCHGSGQVQIRQGFFAVQQACPHCHGRGTLIKDPCNKCHGHGRLEKTK 81
Cdd:PRK14288  130 GCKKTIKVQYQSVCESCDGTGAK-DKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDE 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  82 TLSVKIPAGVDTGDRIRLAGEGEAGEQGaQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDG-RV 160
Cdd:PRK14288  209 EIDAIIPEGIDDQNRMVLKNKGNEYEKG-KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGdEL 287

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110 161 NLKVPGETQTGKLFRMRGRGVKSVRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESFG 220
Cdd:PRK14288  288 ELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKLHASFG 347
PRK10266 PRK10266
curved DNA-binding protein;
78-218 1.45e-32

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 119.93  E-value: 1.45e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  78 EKTKTLSVKIPAGVDTGDRIRLAGEGEAGEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLD 157
Cdd:PRK10266  155 EIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLK 234

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2431123110 158 GRVNLKVPGETQTGKLFRMRGRGVKSVRGgaQGDLLCRVVVETPVSLNDKQKQLLKELQES 218
Cdd:PRK10266  235 ESILLTIPPGSQAGQRLRVKGKGLVSKKQ--TGDLYAVLKIVMPPKPDEKTAALWQQLADA 293
DnaJ_CXXCXGXG pfam00684
DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four ...
 15-75 4.45e-27

DnaJ central domain; The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found.


Pssm-ID: 459904 [Multi-domain]  Cd Length: 65  Bit Score: 98.78  E-value: 4.45e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110  15 CDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHG 75
Cdd:pfam00684   1 CPTCNGSGAKPGTKPTTCPTCGGTGQVRRVQqtgpGFFQMQSTCPTCGGTGKIIKDPCKKCKGKG 65
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 83-219 4.82e-27

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 105.02  E-value: 4.82e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  83 LSVKIPAGVDTGDRIRLAGEGEAGeqgaqsGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVNL 162
Cdd:PRK14299  158 LSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEV 231

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2431123110 163 KVPGETQTGKLFRMRGRGVKSvRGGAQGDLLCRVVVETPVSLNDKQKQLLKELQESF 219
Cdd:PRK14299  232 TIPPRTQAGRKLRLKGKGWPR-GPAGRGDQYAEVRITIPTRPTPEEERLYKQLAELY 287
DnaJ_zf cd10719
Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of ...
 15-75 1.92e-25

Zinc finger domain of DnaJ and HSP40; Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.


Pssm-ID: 199908 [Multi-domain]  Cd Length: 65  Bit Score: 94.63  E-value: 1.92e-25
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431123110  15 CDICHGSGAKVGTKPQTCPTCHGSGQVQIRQ----GFFAVQQACPHCHGRGTLIKDPCNKCHGHG 75
Cdd:cd10719     1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQgtgfGFFQTQTTCPTCGGTGKIIKDPCPKCKGKG 65
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 2-215 1.06e-21

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 92.58  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110   2 GVTKEIRIPTLEECDICHGSGAKVGTKpQTCPTCHGSG-QVQIRQGFFAVQQA---CPHCHGRGTLI--KDPCNKCHGHG 75
Cdd:PTZ00037  140 GAMRKLAINKDVICANCEGHGGPKDAF-VDCKLCNGQGiRVQIRQMGSMIHQTqstCNSCNGQGKIIpeSKKCKNCSGKG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431123110  76 RLEKTKTLSVKIPAGVDTGDRIRLAGEGEAgEQGAQSGDLYVQVQVKQHAIFEREGNNLYCEVPINFAMAALGGEIEVPT 155
Cdd:PTZ00037  219 VKKTRKILEVNIDKGVPNQHKITFHGEADE-KPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITH 297

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2431123110 156 LDGRVnLKV---PGE-TQTGKLFRMRGRGVKSVRGG-AQGDLLCRVVVETPVS--LNDKQKQLLKEL 215
Cdd:PTZ00037  298 LDGRK-LLVntpPGEvVKPGDIKVINNEGMPTYKSPfKKGNLYVTFEVIFPVDrkFTNEEKEILKSL 363
phage_xxxx TIGR02642
uncharacterized phage protein; This uncharacterized protein is found in prophage regions of ...
 52-95 3.46e-04

uncharacterized phage protein; This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274243 [Multi-domain]  Cd Length: 186  Bit Score: 40.24  E-value: 3.46e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2431123110  52 QACPHCHGRGTLIK--DPCNKCHGHGRLEKT-----KTLSVKIPAGVDTGD 95
Cdd:TIGR02642 100 CKCPRCRGTGLIQRrqRECDTCAGTGRFRPTvedllKSFGVDSGAAIVLKD 150
phage_xxxx TIGR02642
uncharacterized phage protein; This uncharacterized protein is found in prophage regions of ...
 30-65 3.42e-03

uncharacterized phage protein; This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274243 [Multi-domain]  Cd Length: 186  Bit Score: 37.16  E-value: 3.42e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 2431123110  30 QTCPTCHGSGQVQIRQGffavqqACPHCHGRGTLIK 65
Cdd:TIGR02642 100 CKCPRCRGTGLIQRRQR------ECDTCAGTGRFRP 129
Cytochrom_C3 cd08168
Heme-binding domain of the class III cytochrome C family and related proteins; This alignment ...
 13-72 5.05e-03

Heme-binding domain of the class III cytochrome C family and related proteins; This alignment models heme binding core motifs as encountered in the cytochrome C3 family and related proteins. Cytochrome C3 is a tetraheme protein found in sulfate-reducing bacteria which use either thiosulfate or sulfate as the ultimate electron acceptors. C3 is an integral part of a complex electron transfer chain. The model also contains triheme cytochromes C7 which function in electron transfer during Fe(III) respiration by Geobacter sulfurreducens (PpcA, PpcB, PpcC, PpcD, and PpcE) and four repeated core motifs as found in the 16-heme cytochrome C HmcA of Desulfovibrio vulgaris Hildenborough which plays a role in electron transfer through the membrane following periplasmic oxidation of hydrogen (resulting in sulfate reduction in the cytoplasm).


Pssm-ID: 173979 [Multi-domain]  Cd Length: 85  Bit Score: 35.29  E-value: 5.05e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431123110  13 EECDICHGSGAKVGTKPQTCPTCHG--SGQVQIRQGFF-AVQQACPHCHGRGTLIKDP-----CNKCH 72
Cdd:cd08168    17 IDCRTCHHKYEGGKGEPQKCAECHShdGTDDPDFVSLKdAFHNSCIGCHKEMAKAGKKtgpvgCAGCH 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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