MULTISPECIES: helix-turn-helix transcriptional regulator [Enterobacteriaceae]
helix-turn-helix transcriptional regulator( domain architecture ID 10650117)
helix-turn-helix (HTH) transcriptional regulator containing a XRE (Xenobiotic Response Element) family HTH domain
List of domain hits
Name | Accession | Description | Interval | E-value | ||
HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
5-58 | 1.26e-09 | ||
Helix-turn-helix XRE-family like proteins; : Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 49.05 E-value: 1.26e-09
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Name | Accession | Description | Interval | E-value | ||
HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
5-58 | 1.26e-09 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 49.05 E-value: 1.26e-09
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XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
1-59 | 1.50e-09 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 49.08 E-value: 1.50e-09
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
5-58 | 2.22e-09 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 48.32 E-value: 2.22e-09
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
5-58 | 1.12e-08 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 46.38 E-value: 1.12e-08
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Name | Accession | Description | Interval | E-value | ||
HTH_XRE | smart00530 | Helix-turn-helix XRE-family like proteins; |
5-58 | 1.26e-09 | ||
Helix-turn-helix XRE-family like proteins; Pssm-ID: 197775 [Multi-domain] Cd Length: 56 Bit Score: 49.05 E-value: 1.26e-09
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XRE | COG1476 | DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; |
1-59 | 1.50e-09 | ||
DNA-binding transcriptional regulator, XRE-family HTH domain [Transcription]; Pssm-ID: 441085 [Multi-domain] Cd Length: 68 Bit Score: 49.08 E-value: 1.50e-09
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HipB | COG1396 | Transcriptional regulator, contains XRE-family HTH domain [Transcription]; |
5-58 | 2.20e-09 | ||
Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Pssm-ID: 441006 [Multi-domain] Cd Length: 83 Bit Score: 49.22 E-value: 2.20e-09
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HTH_XRE | cd00093 | Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the ... |
5-58 | 2.22e-09 | ||
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators. Pssm-ID: 238045 [Multi-domain] Cd Length: 58 Bit Score: 48.32 E-value: 2.22e-09
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HTH_3 | pfam01381 | Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and ... |
5-58 | 1.12e-08 | ||
Helix-turn-helix; This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteriztic of the whole family. Pssm-ID: 460181 [Multi-domain] Cd Length: 55 Bit Score: 46.38 E-value: 1.12e-08
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aMBF1 | COG1813 | Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and ... |
5-58 | 6.91e-08 | ||
Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains [Translation, ribosomal structure and biogenesis]; Pssm-ID: 441418 [Multi-domain] Cd Length: 70 Bit Score: 44.93 E-value: 6.91e-08
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HTH_31 | pfam13560 | Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. |
5-52 | 2.04e-04 | ||
Helix-turn-helix domain; This domain is a helix-turn-helix domain that probably binds to DNA. Pssm-ID: 433309 [Multi-domain] Cd Length: 64 Bit Score: 35.97 E-value: 2.04e-04
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HTH_19 | pfam12844 | Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. ... |
5-58 | 1.51e-03 | ||
Helix-turn-helix domain; Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains. Pssm-ID: 463728 [Multi-domain] Cd Length: 64 Bit Score: 33.80 E-value: 1.51e-03
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AF2118 | COG3620 | Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain ... |
5-57 | 5.23e-03 | ||
Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair) [Transcription]; Pssm-ID: 442838 [Multi-domain] Cd Length: 95 Bit Score: 33.07 E-value: 5.23e-03
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Blast search parameters | ||||
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