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Conserved domains on  [gi|942521130|ref|WP_055346123|]
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MULTISPECIES: GlsB/YeaQ/YmgE family stress response membrane protein [Actinomycetes]

Protein Classification

GlsB/YeaQ/YmgE family stress response membrane protein( domain architecture ID 10006287)

GlsB/YeaQ/YmgE family stress response membrane protein similar to Bacillus subtilis UPF0410 protein YwzA and UPF0410 protein YdaS

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-86 5.32e-18

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


:

Pssm-ID: 441862  Cd Length: 85  Bit Score: 71.23  E-value: 5.32e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942521130  1 MGFFSFLILGLIAGAIAKLILPGKQGGGWFVTLLLGVVGAMLGGWLGGLiFNVNLQGFFNLSTWLLAIGGSILVLLIYGL 80
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGGL-LGIGLVGGFSLGSLIVAVIGAIILLFIYRL 79


                ....*.
gi 942521130 81 ITGRRA 86
Cdd:COG2261  80 IRGRRR 85
 
Name Accession Description Interval E-value
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-86 5.32e-18

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 71.23  E-value: 5.32e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942521130  1 MGFFSFLILGLIAGAIAKLILPGKQGGGWFVTLLLGVVGAMLGGWLGGLiFNVNLQGFFNLSTWLLAIGGSILVLLIYGL 80
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGGL-LGIGLVGGFSLGSLIVAVIGAIILLFIYRL 79


                ....*.
gi 942521130 81 ITGRRA 86
Cdd:COG2261  80 IRGRRR 85
PRK10457 PRK10457
hypothetical protein; Provisional
 1-78 3.00e-09

hypothetical protein; Provisional


Pssm-ID: 182475  Cd Length: 82  Bit Score: 48.65  E-value: 3.00e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 942521130  1 MGFFSFLILGLIAGAIAKLILPGKQGGGWFVTLLLGVVGAMLGGWLGGLIFNVNLQGfFNLSTWLLAIGGSILVLLIY 78
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDG-FNFGSFVVAVIGAIVVLFIY 77
 
Name Accession Description Interval E-value
YeaQ COG2261
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family ...
 1-86 5.32e-18

Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only];


Pssm-ID: 441862  Cd Length: 85  Bit Score: 71.23  E-value: 5.32e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942521130  1 MGFFSFLILGLIAGAIAKLILPGKQGGGWFVTLLLGVVGAMLGGWLGGLiFNVNLQGFFNLSTWLLAIGGSILVLLIYGL 80
Cdd:COG2261   1 MGIIGWIIIGLIAGWLARAIMPGGQGGGLIGTIVLGIVGAFVGGWLGGL-LGIGLVGGFSLGSLIVAVIGAIILLFIYRL 79


                ....*.
gi 942521130 81 ITGRRA 86
Cdd:COG2261  80 IRGRRR 85
PRK10457 PRK10457
hypothetical protein; Provisional
 1-78 3.00e-09

hypothetical protein; Provisional


Pssm-ID: 182475  Cd Length: 82  Bit Score: 48.65  E-value: 3.00e-09
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 942521130  1 MGFFSFLILGLIAGAIAKLILPGKQGGGWFVTLLLGVVGAMLGGWLGGLIFNVNLQGfFNLSTWLLAIGGSILVLLIY 78
Cdd:PRK10457  1 MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWISTFFGFGKVDG-FNFGSFVVAVIGAIVVLFIY 77
YbbP COG3127
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ...
 6-86 2.47e-03

Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442361 [Multi-domain]  Cd Length: 830  Bit Score: 35.16  E-value: 2.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942521130   6 FLILGLIAGaiaklilpgkqgggwfvtlLLGVVGAMLGGW-LGGLIFNVNLQgfFNLSTWLLAIGGSILVLLIYGLITGR 84
Cdd:COG3127  758 FALLGLLAG-------------------LLAALLAELAGWaLARFVFDLPFS--PPWWLWLAGLLGGALLVLLAGLLGAR 816


                 ..
gi 942521130  85 RA 86
Cdd:COG3127  817 RV 818
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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