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Conserved domains on  [gi|1850056181|ref|WP_172868055|]
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transposase, partial [Enterococcus faecium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_ISL3 super family cl41316
ISL3 family transposase;
1-49 1.79e-21

ISL3 family transposase;


The actual alignment was detected with superfamily member NF033550:

Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 84.56  E-value: 1.79e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1850056181   1 KDKDKVLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRILIA 49
Cdd:NF033550  321 KHLAGILAAFEHPLSNGPTEGINNKIKLIKRRAYGFRNFENFRARILLA 369
 
Name Accession Description Interval E-value
transpos_ISL3 NF033550
ISL3 family transposase;
1-49 1.79e-21

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 84.56  E-value: 1.79e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1850056181   1 KDKDKVLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRILIA 49
Cdd:NF033550  321 KHLAGILAAFEHPLSNGPTEGINNKIKLIKRRAYGFRNFENFRARILLA 369
COG3464 COG3464
Transposase [Mobilome: prophages, transposons];
1-50 1.88e-19

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442687 [Multi-domain]  Cd Length: 287  Bit Score: 78.35  E-value: 1.88e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1850056181   1 KDKDKVLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRILIAL 50
Cdd:COG3464   238 RWRDGILNYFDHRISNGPVEGINNKIKLIKRRAYGFRNFENFRARILLAC 287
DDE_Tnp_ISL3 pfam01610
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 6-46 7.72e-15

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


Pssm-ID: 426344  Cd Length: 238  Bit Score: 65.31  E-value: 7.72e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1850056181   6 VLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRI 46
Cdd:pfam01610 198 ILNYFDHRISNGPVEGINNKIKVIKRRAYGFRNFENFRLRI 238
 
Name Accession Description Interval E-value
transpos_ISL3 NF033550
ISL3 family transposase;
1-49 1.79e-21

ISL3 family transposase;


Pssm-ID: 468079 [Multi-domain]  Cd Length: 369  Bit Score: 84.56  E-value: 1.79e-21
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1850056181   1 KDKDKVLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRILIA 49
Cdd:NF033550  321 KHLAGILAAFEHPLSNGPTEGINNKIKLIKRRAYGFRNFENFRARILLA 369
COG3464 COG3464
Transposase [Mobilome: prophages, transposons];
1-50 1.88e-19

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442687 [Multi-domain]  Cd Length: 287  Bit Score: 78.35  E-value: 1.88e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1850056181   1 KDKDKVLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRILIAL 50
Cdd:COG3464   238 RWRDGILNYFDHRISNGPVEGINNKIKLIKRRAYGFRNFENFRARILLAC 287
DDE_Tnp_ISL3 pfam01610
Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains ...
 6-46 7.72e-15

Transposase; Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.


Pssm-ID: 426344  Cd Length: 238  Bit Score: 65.31  E-value: 7.72e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1850056181   6 VLNAMELPYSNAKLEATNNLIKVIKRNAFGFRNFENFKKRI 46
Cdd:pfam01610 198 ILNYFDHRISNGPVEGINNKIKVIKRRAYGFRNFENFRLRI 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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