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Conserved domains on  [gi|2111076000|ref|WP_225934454|]
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MULTISPECIES: TIGR03745 family integrating conjugative element membrane protein [Proteobacteria]

Protein Classification

TIGR03745 family integrating conjugative element membrane protein( domain architecture ID 10023692)

TIGR03745 family integrating conjugative element membrane protein is a DUF2976 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
conj_TIGR03745 TIGR03745
integrating conjugative element membrane protein, PFL_4702 family; Members of this protein ...
 2-105 2.63e-44

integrating conjugative element membrane protein, PFL_4702 family; Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


:

Pssm-ID: 274762  Cd Length: 105  Bit Score: 138.96  E-value: 2.63e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111076000   2 LASLGLAVTPLVSLAALPTLEDPSRGTGSGIMQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYAEIHTGRATWGQFG 81
Cdd:TIGR03745   2 LLALAALLLPQSAFAALPTVEAPSRGEGSGIMQTIKNYGYDGGILLGLLIAAIAFIGVAYHALGTYHEIRTGKATWGDFG 81

                          90       100
                  ....*....|....*....|....
gi 2111076000  82 LTVAVGAILLVVGIWLLTKATGVL 105
Cdd:TIGR03745  82 ATVVVGAILLVVIIWLLTKATTIL 105
 
Name Accession Description Interval E-value
conj_TIGR03745 TIGR03745
integrating conjugative element membrane protein, PFL_4702 family; Members of this protein ...
 2-105 2.63e-44

integrating conjugative element membrane protein, PFL_4702 family; Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 274762  Cd Length: 105  Bit Score: 138.96  E-value: 2.63e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111076000   2 LASLGLAVTPLVSLAALPTLEDPSRGTGSGIMQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYAEIHTGRATWGQFG 81
Cdd:TIGR03745   2 LLALAALLLPQSAFAALPTVEAPSRGEGSGIMQTIKNYGYDGGILLGLLIAAIAFIGVAYHALGTYHEIRTGKATWGDFG 81

                          90       100
                  ....*....|....*....|....
gi 2111076000  82 LTVAVGAILLVVGIWLLTKATGVL 105
Cdd:TIGR03745  82 ATVVVGAILLVVIIWLLTKATTIL 105
DUF2976 pfam11190
Protein of unknown function (DUF2976); This family of proteins has no known function. Some ...
 18-103 7.75e-34

Protein of unknown function (DUF2976); This family of proteins has no known function. Some members are annotated as membrane proteins however this cannot be confirmed.


Pssm-ID: 431713  Cd Length: 86  Bit Score: 111.97  E-value: 7.75e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111076000  18 LPTLEDPSRGTGSGIMQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYAEIHTGRATWGQFGLTVAVGAILLVVGIWL 97
Cdd:pfam11190   1 LPTMEAPSSGGGGDWLQTIQGYLKDGVLLGGLLLAAVAFLWVAYAAIAKFNEARQGKATWGEFGLTVIVGAVLLVFVIWL 80


                  ....*.
gi 2111076000  98 LTKATG 103
Cdd:pfam11190  81 LTKAAG 86
 
Name Accession Description Interval E-value
conj_TIGR03745 TIGR03745
integrating conjugative element membrane protein, PFL_4702 family; Members of this protein ...
 2-105 2.63e-44

integrating conjugative element membrane protein, PFL_4702 family; Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 274762  Cd Length: 105  Bit Score: 138.96  E-value: 2.63e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111076000   2 LASLGLAVTPLVSLAALPTLEDPSRGTGSGIMQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYAEIHTGRATWGQFG 81
Cdd:TIGR03745   2 LLALAALLLPQSAFAALPTVEAPSRGEGSGIMQTIKNYGYDGGILLGLLIAAIAFIGVAYHALGTYHEIRTGKATWGDFG 81

                          90       100
                  ....*....|....*....|....
gi 2111076000  82 LTVAVGAILLVVGIWLLTKATGVL 105
Cdd:TIGR03745  82 ATVVVGAILLVVIIWLLTKATTIL 105
DUF2976 pfam11190
Protein of unknown function (DUF2976); This family of proteins has no known function. Some ...
 18-103 7.75e-34

Protein of unknown function (DUF2976); This family of proteins has no known function. Some members are annotated as membrane proteins however this cannot be confirmed.


Pssm-ID: 431713  Cd Length: 86  Bit Score: 111.97  E-value: 7.75e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2111076000  18 LPTLEDPSRGTGSGIMQTLQNYGYDIVLLIALLVVASMFVGVCYHAYTRYAEIHTGRATWGQFGLTVAVGAILLVVGIWL 97
Cdd:pfam11190   1 LPTMEAPSSGGGGDWLQTIQGYLKDGVLLGGLLLAAVAFLWVAYAAIAKFNEARQGKATWGEFGLTVIVGAVLLVFVIWL 80


                  ....*.
gi 2111076000  98 LTKATG 103
Cdd:pfam11190  81 LTKAAG 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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