NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2328184682|ref|WP_265217184|]
View 

MULTISPECIES: MobH family relaxase [Enterobacteriaceae]

Protein Classification

TraI_2 and TraI_2_C domain-containing protein( domain architecture ID 12075315)

TraI_2 and TraI_2_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TraI_2 pfam07514
Putative helicase; Some members of this family have been annotated as helicases.
 26-339 1.47e-147

Putative helicase; Some members of this family have been annotated as helicases.


:

Pssm-ID: 429506  Cd Length: 326  Bit Score: 429.59  E-value: 1.47e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  26 GLTRPESAASLLATPRRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALK 105
Cdd:pfam07514   1 GWLRPQSAEQLLATPRRQRLIELIWQRTGLPRTDFERLYLPALRRYAELVQLLPASENHHHAGPGGLLDHGLEMAAYALK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 106 LRQSYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRVWHPWHGPLQHHYRF----RYR------K 175
Cdd:pfam07514  81 LRQGHLLPAGETPERQAAQAEAWTAAVFYAALLHDLGKPATDLRIEDRDGNRWHPWHGPLTQPYRRrgadRYFvrwhqhH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 176 EREYRLHSAASGLLYNRVLDREILDWLCGYPELWSALLYVLAGQYEHAGVLGELVTQADRASVAQEL-GGDPAKAMAAPK 254
Cdd:pfam07514 161 GRDYSLHGAASSLLYNRIIPAAVLDWLSGYPDIWEALLYVLSGQYEHASTLAELVKQADRASVAQDLeGGDPARALAAPG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 255 HALQRKLLEGLRYLLKEELKLNQPQA-SDGWLTQDALWLVSKTVSDKLRAHLLSQGIEGIPANNTAVFNILQDHGMLQAT 333
Cdd:pfam07514 241 VPLQRLLMDAMRTLLRSEGTLNQNTKgSDGWLTEDGLWLVSKTGADEIRAHLLTQGIDGVPTSNDTLFDMLQEHGIIEPA 320


                  ....*.
gi 2328184682 334 PDDKAI 339
Cdd:pfam07514 321 PDGKAI 326
TraI_2_C pfam07515
Putative conjugal transfer nickase/helicase TraI C-term;
484-608 5.55e-67

Putative conjugal transfer nickase/helicase TraI C-term;


:

Pssm-ID: 429507  Cd Length: 123  Bit Score: 214.11  E-value: 5.55e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 484 PSGEHFIAWLRQHIEARKLIINDAKALVHTVADTVYLVSPGVFQRYAQEhpkTAFLAKQEQIADWQWVQIRFEKLQLHRK 563
Cdd:pfam07515   1 PSGEHFLAWLQQGIASRRIIINDAKALVHTVPEGVFLVSPGIFQRYAQE---VALLAKQEDLQDWQWVQKRFEKLGLHRK 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2328184682 564 QDSGLNIWTCEVTGPRKSRRLHGYLLDDPLVLFSEP-PPKNPYLSI 608
Cdd:pfam07515  78 QPSGLNIWTCEVTGPRKSRTLHGYLLEDPGLVFGEEvPPNNPYLKL 123
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
358-477 6.01e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 358 RLAPALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLdLLGT 437
Cdd:PRK07003  429 APAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT-PAAV 507

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2328184682 438 PDIEVPSSAPAVDKlparnPEQDLETGSTEAPSLPLAALP 477
Cdd:PRK07003  508 PDARAPAAASREDA-----PAAAAPPAPEARPPTPAAAAP 542
 
Name Accession Description Interval E-value
TraI_2 pfam07514
Putative helicase; Some members of this family have been annotated as helicases.
 26-339 1.47e-147

Putative helicase; Some members of this family have been annotated as helicases.


Pssm-ID: 429506  Cd Length: 326  Bit Score: 429.59  E-value: 1.47e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  26 GLTRPESAASLLATPRRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALK 105
Cdd:pfam07514   1 GWLRPQSAEQLLATPRRQRLIELIWQRTGLPRTDFERLYLPALRRYAELVQLLPASENHHHAGPGGLLDHGLEMAAYALK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 106 LRQSYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRVWHPWHGPLQHHYRF----RYR------K 175
Cdd:pfam07514  81 LRQGHLLPAGETPERQAAQAEAWTAAVFYAALLHDLGKPATDLRIEDRDGNRWHPWHGPLTQPYRRrgadRYFvrwhqhH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 176 EREYRLHSAASGLLYNRVLDREILDWLCGYPELWSALLYVLAGQYEHAGVLGELVTQADRASVAQEL-GGDPAKAMAAPK 254
Cdd:pfam07514 161 GRDYSLHGAASSLLYNRIIPAAVLDWLSGYPDIWEALLYVLSGQYEHASTLAELVKQADRASVAQDLeGGDPARALAAPG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 255 HALQRKLLEGLRYLLKEELKLNQPQA-SDGWLTQDALWLVSKTVSDKLRAHLLSQGIEGIPANNTAVFNILQDHGMLQAT 333
Cdd:pfam07514 241 VPLQRLLMDAMRTLLRSEGTLNQNTKgSDGWLTEDGLWLVSKTGADEIRAHLLTQGIDGVPTSNDTLFDMLQEHGIIEPA 320


                  ....*.
gi 2328184682 334 PDDKAI 339
Cdd:pfam07514 321 PDGKAI 326
MobH NF041494
MobH family relaxase;
29-359 8.85e-127

MobH family relaxase;


Pssm-ID: 469382  Cd Length: 340  Bit Score: 376.93  E-value: 8.85e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  29 RPESAASLLATprRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALKLRQ 108
Cdd:NF041494    3 PVLPADELLAT--QQELIARIRQLLGLSDEEFERLYLPVIERYAAFVHLLPASEAHHHAGAGGLLRHGLEVAFYALRARD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 109 SYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRV-WHPWHGPLQ--------HHYRFRYRKEREY 179
Cdd:NF041494   81 GHLLPPGATPEERRALEPRWRYAAFLAGLLHDIGKPLTDLRVTDRDGSLqWNPYLGPLHdwalrngvDRYFVRWRAGRDY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 180 RLHSAASGLLYNRVLDREILDWLCGYPELWSALLYVLAGQyEHAGVLGELVTQADRASVAQELGGDP----AKAMAAPkh 255
Cdd:NF041494  161 RLHEALSLLLLPRILPPEALDWLAEDPELVSALLAALSGQ-DDAGVLAELVRRADQASVARDLGGDRsrygATALGVP-- 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 256 aLQRKLLEGLRYLLKE-ELKLNQPqASDGWLTQDALWLVSKTVSDKLRAHLLSQGIEGIPANNTAVFNILQDHGMLQATP 334
Cdd:NF041494  238 -LERYLIDAMRRLLKEgSWKLNRP-GARVWLTGDGLFLVWKTAADDIRALLEQDGIPGIPRDPDRLFDILQEHGLAEPNP 315

                         330       340
                  ....*....|....*....|....*.
gi 2328184682 335 -DDKAIWKAVVTSDAGWThTFTLLRL 359
Cdd:NF041494  316 eDGKAYWRVQIPEILGEV-WLTLLKL 340
ICE_TraI_Pfluor TIGR03760
integrating conjugative element relaxase, PFL_4751 family; Members of this protein family are ...
 26-242 9.56e-96

integrating conjugative element relaxase, PFL_4751 family; Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.


Pssm-ID: 163472  Cd Length: 218  Bit Score: 292.68  E-value: 9.56e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  26 GLTRPESAASLLATPRRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALK 105
Cdd:TIGR03760   2 GYFLPLSASDLLSTPRRQQLLQQLWRNSSLSAAVYEQLYLQPLERLAELVQQLPASENHHHAYLGGLLDHTLEVTAAAVR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 106 LRQSYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRVWHPWHGPLQHHYRFRYRKEREYRLHSAA 185
Cdd:TIGR03760  82 LSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLAVDIEVELQDGQRWHPWLGVPGGPYRFRFKKERDTRLAQRL 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2328184682 186 SGLLYNRVLDREILDWLCGYPELWSALLYVLAGQYEHAGVLGELVTQADRASVAQEL 242
Cdd:TIGR03760 162 GALLAPRLLPAEALAWLSSNPEVLATLLAVLSGDYEDAGVLGEIVREADRKSGAQNL 218
TraI_2_C pfam07515
Putative conjugal transfer nickase/helicase TraI C-term;
484-608 5.55e-67

Putative conjugal transfer nickase/helicase TraI C-term;


Pssm-ID: 429507  Cd Length: 123  Bit Score: 214.11  E-value: 5.55e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 484 PSGEHFIAWLRQHIEARKLIINDAKALVHTVADTVYLVSPGVFQRYAQEhpkTAFLAKQEQIADWQWVQIRFEKLQLHRK 563
Cdd:pfam07515   1 PSGEHFLAWLQQGIASRRIIINDAKALVHTVPEGVFLVSPGIFQRYAQE---VALLAKQEDLQDWQWVQKRFEKLGLHRK 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2328184682 564 QDSGLNIWTCEVTGPRKSRRLHGYLLDDPLVLFSEP-PPKNPYLSI 608
Cdd:pfam07515  78 QPSGLNIWTCEVTGPRKSRTLHGYLLEDPGLVFGEEvPPNNPYLKL 123
YhaM COG3481
3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily ...
 71-144 2.03e-08

3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily [Translation, ribosomal structure and biogenesis]; 3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 442704 [Multi-domain]  Cd Length: 316  Bit Score: 56.35  E-value: 2.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  71 YAELVQQFPASESHHHAYPGGLLDHGLEIVAYALKLRQSY------LLPAGTtpedqaaqaeawtaatayaaLLHDVGKI 144
Cdd:COG3481   141 FRERFLTAPAAKSNHHAYIGGLLEHTLSVARLAKALADLYpelnrdLLIAGA--------------------ILHDIGKV 200
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
358-477 6.01e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 358 RLAPALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLdLLGT 437
Cdd:PRK07003  429 APAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT-PAAV 507

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2328184682 438 PDIEVPSSAPAVDKlparnPEQDLETGSTEAPSLPLAALP 477
Cdd:PRK07003  508 PDARAPAAASREDA-----PAAAAPPAPEARPPTPAAAAP 542
DUF4813 pfam16072
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ...
 382-457 1.32e-03

Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.


Pssm-ID: 435117 [Multi-domain]  Cd Length: 288  Bit Score: 41.28  E-value: 1.32e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2328184682 382 QDEAAPAEPTSAPSPDEGPS--PPTTGAIARPAPH-PLAPSAPAPDTDGIAALLDLLGTPDIEVPSSAPAVDKLPARNP 457
Cdd:pfam16072 166 QQPAAPAAPAYPVAPAAYPAqaPAAAPAPAPGAPQtPLAPLNPVAAAPAAAAGAAAAPVVAAAAPAAAAPPPPAPAAPP 244
 
Name Accession Description Interval E-value
TraI_2 pfam07514
Putative helicase; Some members of this family have been annotated as helicases.
 26-339 1.47e-147

Putative helicase; Some members of this family have been annotated as helicases.


Pssm-ID: 429506  Cd Length: 326  Bit Score: 429.59  E-value: 1.47e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  26 GLTRPESAASLLATPRRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALK 105
Cdd:pfam07514   1 GWLRPQSAEQLLATPRRQRLIELIWQRTGLPRTDFERLYLPALRRYAELVQLLPASENHHHAGPGGLLDHGLEMAAYALK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 106 LRQSYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRVWHPWHGPLQHHYRF----RYR------K 175
Cdd:pfam07514  81 LRQGHLLPAGETPERQAAQAEAWTAAVFYAALLHDLGKPATDLRIEDRDGNRWHPWHGPLTQPYRRrgadRYFvrwhqhH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 176 EREYRLHSAASGLLYNRVLDREILDWLCGYPELWSALLYVLAGQYEHAGVLGELVTQADRASVAQEL-GGDPAKAMAAPK 254
Cdd:pfam07514 161 GRDYSLHGAASSLLYNRIIPAAVLDWLSGYPDIWEALLYVLSGQYEHASTLAELVKQADRASVAQDLeGGDPARALAAPG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 255 HALQRKLLEGLRYLLKEELKLNQPQA-SDGWLTQDALWLVSKTVSDKLRAHLLSQGIEGIPANNTAVFNILQDHGMLQAT 333
Cdd:pfam07514 241 VPLQRLLMDAMRTLLRSEGTLNQNTKgSDGWLTEDGLWLVSKTGADEIRAHLLTQGIDGVPTSNDTLFDMLQEHGIIEPA 320


                  ....*.
gi 2328184682 334 PDDKAI 339
Cdd:pfam07514 321 PDGKAI 326
MobH NF041494
MobH family relaxase;
29-359 8.85e-127

MobH family relaxase;


Pssm-ID: 469382  Cd Length: 340  Bit Score: 376.93  E-value: 8.85e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  29 RPESAASLLATprRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALKLRQ 108
Cdd:NF041494    3 PVLPADELLAT--QQELIARIRQLLGLSDEEFERLYLPVIERYAAFVHLLPASEAHHHAGAGGLLRHGLEVAFYALRARD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 109 SYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRV-WHPWHGPLQ--------HHYRFRYRKEREY 179
Cdd:NF041494   81 GHLLPPGATPEERRALEPRWRYAAFLAGLLHDIGKPLTDLRVTDRDGSLqWNPYLGPLHdwalrngvDRYFVRWRAGRDY 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 180 RLHSAASGLLYNRVLDREILDWLCGYPELWSALLYVLAGQyEHAGVLGELVTQADRASVAQELGGDP----AKAMAAPkh 255
Cdd:NF041494  161 RLHEALSLLLLPRILPPEALDWLAEDPELVSALLAALSGQ-DDAGVLAELVRRADQASVARDLGGDRsrygATALGVP-- 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 256 aLQRKLLEGLRYLLKE-ELKLNQPqASDGWLTQDALWLVSKTVSDKLRAHLLSQGIEGIPANNTAVFNILQDHGMLQATP 334
Cdd:NF041494  238 -LERYLIDAMRRLLKEgSWKLNRP-GARVWLTGDGLFLVWKTAADDIRALLEQDGIPGIPRDPDRLFDILQEHGLAEPNP 315

                         330       340
                  ....*....|....*....|....*.
gi 2328184682 335 -DDKAIWKAVVTSDAGWThTFTLLRL 359
Cdd:NF041494  316 eDGKAYWRVQIPEILGEV-WLTLLKL 340
ICE_TraI_Pfluor TIGR03760
integrating conjugative element relaxase, PFL_4751 family; Members of this protein family are ...
 26-242 9.56e-96

integrating conjugative element relaxase, PFL_4751 family; Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.


Pssm-ID: 163472  Cd Length: 218  Bit Score: 292.68  E-value: 9.56e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  26 GLTRPESAASLLATPRRQKLLEHIWQRTSLSRKQFALLYLGPLERYAELVQQFPASESHHHAYPGGLLDHGLEIVAYALK 105
Cdd:TIGR03760   2 GYFLPLSASDLLSTPRRQQLLQQLWRNSSLSAAVYEQLYLQPLERLAELVQQLPASENHHHAYLGGLLDHTLEVTAAAVR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 106 LRQSYLLPAGTTPEDQAAQAEAWTAATAYAALLHDVGKIAVDLHVESSDGRVWHPWHGPLQHHYRFRYRKEREYRLHSAA 185
Cdd:TIGR03760  82 LSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGKLAVDIEVELQDGQRWHPWLGVPGGPYRFRFKKERDTRLAQRL 161

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2328184682 186 SGLLYNRVLDREILDWLCGYPELWSALLYVLAGQYEHAGVLGELVTQADRASVAQEL 242
Cdd:TIGR03760 162 GALLAPRLLPAEALAWLSSNPEVLATLLAVLSGDYEDAGVLGEIVREADRKSGAQNL 218
TraI_2_C pfam07515
Putative conjugal transfer nickase/helicase TraI C-term;
484-608 5.55e-67

Putative conjugal transfer nickase/helicase TraI C-term;


Pssm-ID: 429507  Cd Length: 123  Bit Score: 214.11  E-value: 5.55e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 484 PSGEHFIAWLRQHIEARKLIINDAKALVHTVADTVYLVSPGVFQRYAQEhpkTAFLAKQEQIADWQWVQIRFEKLQLHRK 563
Cdd:pfam07515   1 PSGEHFLAWLQQGIASRRIIINDAKALVHTVPEGVFLVSPGIFQRYAQE---VALLAKQEDLQDWQWVQKRFEKLGLHRK 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 2328184682 564 QDSGLNIWTCEVTGPRKSRRLHGYLLDDPLVLFSEP-PPKNPYLSI 608
Cdd:pfam07515  78 QPSGLNIWTCEVTGPRKSRTLHGYLLEDPGLVFGEEvPPNNPYLKL 123
YhaM COG3481
3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily ...
 71-144 2.03e-08

3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily [Translation, ribosomal structure and biogenesis]; 3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 442704 [Multi-domain]  Cd Length: 316  Bit Score: 56.35  E-value: 2.03e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  71 YAELVQQFPASESHHHAYPGGLLDHGLEIVAYALKLRQSY------LLPAGTtpedqaaqaeawtaatayaaLLHDVGKI 144
Cdd:COG3481   141 FRERFLTAPAAKSNHHAYIGGLLEHTLSVARLAKALADLYpelnrdLLIAGA--------------------ILHDIGKV 200
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
358-477 6.01e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 358 RLAPALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLdLLGT 437
Cdd:PRK07003  429 APAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT-PAAV 507

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2328184682 438 PDIEVPSSAPAVDKlparnPEQDLETGSTEAPSLPLAALP 477
Cdd:PRK07003  508 PDARAPAAASREDA-----PAAAAPPAPEARPPTPAAAAP 542
PHA03247 PHA03247
large tegument protein UL36; Provisional
 367-484 2.35e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 2.35e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  367 GSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIARPA-PHPLAPSAPAPDTDGIAALLDLLGTPDIEVP-- 443
Cdd:PHA03247  2752 GGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESlPSPWDPADPPAAVLAPAAALPPAASPAGPLPpp 2831

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2328184682  444 -SSAPAVDKLPARNPEQDLETGSTEAPSLPLAALPNDINTAP 484
Cdd:PHA03247  2832 tSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873
PHA03247 PHA03247
large tegument protein UL36; Provisional
 370-485 3.17e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 3.17e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  370 RPPAFQGTVEVVQDEAAP----AEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLDL----LGTPDIE 441
Cdd:PHA03247  2684 RRRAARPTVGSLTSLADPppppPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGgparPARPPTT 2763

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2328184682  442 VPSSAPAVDKLPARNPEQDL--ETGSTEAPSLPLAALPNDINTAPS 485
Cdd:PHA03247  2764 AGPPAPAPPAAPAAGPPRRLtrPAVASLSESRESLPSPWDPADPPA 2809
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 367-496 3.82e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 3.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 367 GSERPPAFQGTvevvQDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLDLLGTPDI------ 440
Cdd:PRK07764  389 GGAGAPAAAAP----SAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPaaapsa 464

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2328184682 441 -EVPSSAPAVDKLPARNPEQDLETGSTEAPSLPLAAlpndinTAPSGEHFIAWLRQH 496
Cdd:PRK07764  465 qPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP------AAPAGADDAATLRER 515
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
 367-448 4.39e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.13  E-value: 4.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 367 GSERPPAFQGTVEVVQDEAAPA--EPTSAPSP-----DEGPSPPTTGAIARPAPH-PLAPSAP-APDTDGIAAlldllGT 437
Cdd:PRK14959  401 GTQGPQGTAPAAGMTPSSAAPAtpAPSAAPSPrvpwdDAPPAPPRSGIPPRPAPRmPEASPVPgAPDSVASAS-----DA 475

                          90
                  ....*....|.
gi 2328184682 438 PDIEVPSSAPA 448
Cdd:PRK14959  476 PPTLGDPSDTA 486
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 384-467 8.62e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 42.24  E-value: 8.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 384 EAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSA-PAPDTDGIAALLDLLGTPDIEVPSSAPAVDKLPARNPEQDL- 461
Cdd:PRK14954  412 EAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQAsAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQPVQASSSDAa 491


                  ....*.
gi 2328184682 462 ETGSTE 467
Cdd:PRK14954  492 QTGVFE 497
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 355-479 9.22e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 9.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 355 TLLR-LA--PALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPApdTDGIAAL 431
Cdd:PRK07994  352 TLLRmLAfhPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQL--LAARQQL 429

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2328184682 432 LDLLGTPDIEVPSSAPAVDKLPARNPEQDLETGSTEAPSLPLAALPND 479
Cdd:PRK07994  430 QRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477
DUF4813 pfam16072
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ...
 382-457 1.32e-03

Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length.


Pssm-ID: 435117 [Multi-domain]  Cd Length: 288  Bit Score: 41.28  E-value: 1.32e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2328184682 382 QDEAAPAEPTSAPSPDEGPS--PPTTGAIARPAPH-PLAPSAPAPDTDGIAALLDLLGTPDIEVPSSAPAVDKLPARNP 457
Cdd:pfam16072 166 QQPAAPAAPAYPVAPAAYPAqaPAAAPAPAPGAPQtPLAPLNPVAAAPAAAAGAAAAPVVAAAAPAAAAPPPPAPAAPP 244
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
359-469 2.16e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.91  E-value: 2.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 359 LAPALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSP-PTTGAIARPAPHPLAPSAPAPDTDGIAALLDLLGT 437
Cdd:PRK14971  379 IKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGtPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI 458

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2328184682 438 PDIEVPSSAPAVDKlPARNPEQDLETGSTEAP 469
Cdd:PRK14971  459 PVSKVSSLGPSTLR-PIQEKAEQATGNIKEAP 489
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
360-486 2.30e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 2.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 360 APALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIA-RPAPHPLAPSAPAPDtdgiAALLDLLGTP 438
Cdd:PRK07003  390 AVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGdDAADGDAPVPAKANA----RASADSRCDE 465

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2328184682 439 DIEVPSSAPAVDKLPARN--PEQDLETGSTEAPSLPLAALPNDINTAPSG 486
Cdd:PRK07003  466 RDAQPPADSGSASAPASDapPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515
PHA03247 PHA03247
large tegument protein UL36; Provisional
 355-485 2.43e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 2.43e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682  355 TLLRLAPALIWEGSERPPAFQGTVEVVQDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPlAPSAPAPDTDGIAALLDL 434
Cdd:PHA03247  2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP-PRRLTRPAVASLSESRES 2797

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2328184682  435 LGTPDIEVPSSAPAVDKLPARNPeqdletgsTEAPSLPLAALPNDINTAPS 485
Cdd:PHA03247  2798 LPSPWDPADPPAAVLAPAAALPP--------AASPAGPLPPPTSAQPTAPP 2840
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
353-477 2.58e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 2.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 353 TFTLLR-LAPALIWEGSERPPAFQGTVEVVQDEAA-----PAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTD 426
Cdd:PRK12323  354 TMTLLRmLAFRPGQSGGGAGPATAAAAPVAQPAPAaaapaAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2328184682 427 GIAALLDLLGTPDIEVPSSAPAVDKLPA-RNPEQDLETGSTEAPSLPLAALP 477
Cdd:PRK12323  434 AAARQASARGPGGAPAPAPAPAAAPAAAaRPAAAGPRPVAAAAAAAPARAAP 485
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
371-477 4.02e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 4.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 371 PPAFQGTVEVVQDEAAPAePTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLDLLGTPDIEVPSSAPAVD 450
Cdd:PRK12323  434 AAARQASARGPGGAPAPA-PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPA 512

                          90       100
                  ....*....|....*....|....*..
gi 2328184682 451 KLPARNPEQDLETGSTEAPSLPLAALP 477
Cdd:PRK12323  513 QPDAAPAGWVAESIPDPATADPDDAFE 539
PRK12495 PRK12495
hypothetical protein; Provisional
 382-448 6.51e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 38.70  E-value: 6.51e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2328184682 382 QDEAAPAEPTSAPSPDEGPSPPTTGAIARPAPHPLAPSAPAPDTDGIAALLDLLGTPDIEVPSSAPA 448
Cdd:PRK12495  109 ADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDA 175
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
361-477 8.24e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 8.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2328184682 361 PALIWEGSerPPAFQGTVEVVQDEAAPAEPTSAPSPDEgPSPPTTGAIARPAPHPLAPSAPAPDTdGIAALLDLLGTPDI 440
Cdd:PRK07003  486 PDAAFEPA--PRAAAPSAATPAAVPDARAPAAASREDA-PAAAAPPAPEARPPTPAAAAPAARAG-GAAAALDVLRNAGM 561

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2328184682 441 EVPS----SAPAVDKLPARNPeqdletgSTEAPSLPLAALP 477
Cdd:PRK07003  562 RVSSdrgaRAAAAAKPAAAPA-------AAPKPAAPRVAVQ 595
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH