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Conserved domains on  [gi|1783499202|ref|YP_009722817|]
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ribosomal protein S7 (chloroplast) [Citrus polytrifolia]

Protein Classification

30S ribosomal protein S7( domain architecture ID 10000056)

30S ribosomal protein S7 is an assembly initiator protein which participates in the assembly of the bacterial 30S ribosomal subunit

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rps7 CHL00053
ribosomal protein S7
 1-155 5.58e-100

ribosomal protein S7


:

Pssm-ID: 176994  Cd Length: 155  Bit Score: 283.70  E-value: 5.58e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   1 MSRRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRV 80
Cdd:CHL00053    1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  81 GGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:CHL00053   81 GGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
 
Name Accession Description Interval E-value
rps7 CHL00053
ribosomal protein S7
 1-155 5.58e-100

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 283.70  E-value: 5.58e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   1 MSRRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRV 80
Cdd:CHL00053    1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  81 GGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:CHL00053   81 GGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 10-154 5.52e-86

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 247.96  E-value: 5.52e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  10 KTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPI 89
Cdd:cd14871     2 RPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVPV 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  90 EIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHF 154
Cdd:cd14871    82 EVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-155 4.47e-75

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 220.70  E-value: 4.47e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   1 MSRRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRV 80
Cdd:COG0049     1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  81 GGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:COG0049    81 GGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYR 155
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-155 3.21e-73

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 216.01  E-value: 3.21e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   3 RRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGG 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1783499202  83 STHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-149 7.71e-65

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 194.14  E-value: 7.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  18 YRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGK 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1783499202  98 ALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANR 149
Cdd:pfam00177  81 ALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
 
Name Accession Description Interval E-value
rps7 CHL00053
ribosomal protein S7
 1-155 5.58e-100

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 283.70  E-value: 5.58e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   1 MSRRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRV 80
Cdd:CHL00053    1 MSRRGTAKKRTAKPDPIYRNRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEVKARRV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  81 GGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:CHL00053   81 GGSTYQVPIEIGSTRGKALAIRWLLKASRKRSGRNMAFKLSSELVDAAKGSGNAIRKKEETHRMAEANRAFAHFR 155
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 10-154 5.52e-86

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 247.96  E-value: 5.52e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  10 KTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPI 89
Cdd:cd14871     2 RPIKPDPIYNSRLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEVKARRVGGSTYQVPV 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  90 EIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHF 154
Cdd:cd14871    82 EVRSERGTALAIRWLLKASRKRSGRSMASKLANEIIDAAKNTGNAIRKKEETHRMAEANKAFAHF 146
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 1-155 4.47e-75

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 220.70  E-value: 4.47e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   1 MSRRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRV 80
Cdd:COG0049     1 MPRRGRAPKREVLPDPKYNSVLVTKFINKIMLDGKKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLVEVKSRRV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  81 GGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:COG0049    81 GGATYQVPVEVRPERRQALAMRWIIDAARKRKEKTMAERLANELLDASNNRGAAVKKREDTHKMAEANKAFAHYR 155
rpsG_bact TIGR01029
ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar ...
 3-155 3.21e-73

ribosomal protein S7, bacterial/organelle; This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5). The eukaryotic and archaeal branch is described by model TIGR01028. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273403  Cd Length: 154  Bit Score: 216.01  E-value: 3.21e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   3 RRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGG 82
Cdd:TIGR01029   1 RKRKAEKRKIPPDPVYGSVLLNKFINRVMKDGKKSLAESIVYKAFERIAKKTGEDPLEVFEQALENVKPLVEVKSRRVGG 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1783499202  83 STHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:TIGR01029  81 ATYQVPVEVRPSRRYALAIRWLIEAARKRGGKSMAERLANEILDAANNTGAAIKKREDTHRMAEANKAFAHYR 153
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 1-155 1.52e-71

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 211.89  E-value: 1.52e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202   1 MSRRGTTEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRV 80
Cdd:PRK05302    1 MPRRRRAPKREVLPDPKYGSVLVTKFINKLMLDGKKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEVKSRRV 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  81 GGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:PRK05302   81 GGATYQVPVEVRPERRQALAMRWLVEAARKRGEKTMAERLANELLDAANNRGAAVKKREDTHRMAEANKAFAHYR 155
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 18-149 7.71e-65

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 194.14  E-value: 7.71e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  18 YRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGK 97
Cdd:pfam00177   1 YNSPLVEKLINRLMRDGKKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRV 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1783499202  98 ALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANR 149
Cdd:pfam00177  81 ALALRWIIEAARKRSEKSMAERLANELIDAANGRGAAVKKKEETHRMAEANR 132
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 15-149 3.79e-63

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 189.97  E-value: 3.79e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  15 DPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSA 94
Cdd:cd14869     4 DPKYNSVLVSKFINKLMKDGKKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEVRSRRVGGATYQVPVEVRPE 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  95 QGKALAVRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANR 149
Cdd:cd14869    84 RRQSLALRWIIEAARKRKEKSMAEKLAAELLDAANNTGAAVKKKEDTHKMAEANK 138
uS7 cd00323
Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the ...
 22-149 8.91e-37

Ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271245  Cd Length: 130  Bit Score: 122.75  E-value: 8.91e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  22 LVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGKALAV 101
Cdd:cd00323     3 LLKKFINILMKDGKKSKAEKIFSKALKILKKKTKKNPLKLLVEAIENIKPLVEVRSIKKRGKVYQVPVPLSPNRQVSLAI 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1783499202 102 RWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANR 149
Cdd:cd00323    83 KWLLKAVRKRKETSFAERLANEILDASNNKGASIKKKDDLHKLAEANR 130
uS7_Mitochondria_Mammalian cd14870
Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein ...
 10-155 4.40e-36

Mammalian Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. MRPS7 shows more homology to bacterial RPS7 than mitochondrial proteins from plants and fungi. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The ribosomes present in mammalian mitochondria have more proteins and low percentage of ribosomal RNA than bacterial ribosomes. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271249  Cd Length: 199  Bit Score: 123.12  E-value: 4.40e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  10 KTAKSD---PIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKI---------------QQKTEKNPLSVLRQAIRGVTP 71
Cdd:cd14870    35 KAAKSDetsSVFYDPLVSKFINMMMKKGNKELAREIVEKTLENIkriqlekyhkatdeeKESIELNPLVIFHKAVENCKP 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  72 DIAVKARRVGGSTHQVPIEIGSAQGKALAVRWLLGASRKRPGRN-MAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRA 150
Cdd:cd14870   115 LLGLTSVKRGGKTYQVPVPITPNRARFLAMKWLIEACREKKRKIrFPEKLARELLDASNNQGKVVKKKQELHKQCEANRA 194


                  ....*
gi 1783499202 151 FAHFR 155
Cdd:cd14870   195 YAHYR 199
uS7_plant cd15484
plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part ...
 20-155 8.18e-31

plant ribosomal protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271251  Cd Length: 147  Bit Score: 108.24  E-value: 8.18e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  20 NRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEK---NPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQG 96
Cdd:cd15484     1 KLLIKKFVNFLMKKGKKTKARTILFKTFHLLKQKQSAqteDVLVILVTAVENVKPSFEVRKVRIAGTTQLIPAALSPNKQ 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1783499202  97 KALAVRWLLGASRKRP------GRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
Cdd:cd15484    81 ETLAIRWILEAAKKKQrkqskkRYSFAYCLADEILDASKKQGKARQKRDELHKLAEANRSLAHYR 145
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 22-149 2.90e-30

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 106.89  E-value: 2.90e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  22 LVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGKALAV 101
Cdd:cd14868    24 LLEQLTNLIMKHGKKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPLVKIKSQKKGAKNVQVPVPLNERQRRRKAI 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1783499202 102 RWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANR 149
Cdd:cd14868   104 KWILEASDKRPGKSFSERLAEEIIAVVEGTSSALEKKEQVHKLAVANR 151
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 22-149 7.55e-15

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 67.96  E-value: 7.55e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  22 LVNMLVNRILKH----GKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGK 97
Cdd:cd14867    49 IVERLINSLMMHgrntGKKLMAYRIVKHAFEIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRV 128

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1783499202  98 ALAVRWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149
Cdd:cd14867   129 NQALRLIATGAREAAFRNiksIAECLADELINAAKGSSNsyAIKKKDELERVAKSNR 185
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 21-149 1.01e-14

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 67.87  E-value: 1.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  21 RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGKALA 100
Cdd:TIGR01028  53 RLINKVMRSGRNNGKKLKAYRIVKEAFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQA 132

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1783499202 101 VRWL-LGASRK--RPGRNMAFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149
Cdd:TIGR01028 133 LRNIaLGAREAafRNKKSIAECLAEEIILAANGDSKsyAIKKKEELERVAKSAR 186
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 21-149 3.35e-13

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 63.77  E-value: 3.35e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  21 RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGKALA 100
Cdd:PRK04027   62 RLINKLMRTERNTGKKQKAYNIVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLA 141

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202 101 VRWL-LGAsrkrpgRNMAFK--------LSSELVDAAKGSGD--AIRKKEETHRMAEANR 149
Cdd:PRK04027  142 LRFIaEGA------RQASFKnkksieeaLAEEIIAAANNDPKsyAVRKKEEIERVAKSAR 195
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 21-149 2.54e-09

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 53.23  E-value: 2.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1783499202  21 RLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTEKNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSAQGKALA 100
Cdd:PTZ00091   60 RLVNSLMFHGRNNGKKLLAVRIVKHAFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQA 139

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1783499202 101 VRWLLGASRKRPGRNM---AFKLSSELVDAAKGSGD--AIRKKEETHRMAEANR 149
Cdd:PTZ00091  140 IYLICKGAREAAFRNIktiAECLADEIINASKESSNsyAIKKKDEVERVAKANR 193
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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