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Taxonomy browser (Pectobacterium parmentieri)

Pectobacterium parmentieri

Taxonomy ID: 1905730 (for references in articles please use NCBI:txid1905730)
current name
Pectobacterium parmentieri Khayi et al. 2016
type strain of Pectobacterium parmentieri: personal::RNS 08-42-1A, CFBP:8475, BCCM/LMG:29774, personal::RNS 08.42.1A
includes:
Pectobacterium sp. SCC3193
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 6,365 6,265 47
Protein 118,262 113,789 -
Structure 2 - -
Genome 1 1 -
Popset 31 31 -
PubMed Central 67 65 -
Gene 19,181 9,658 -
SRA Experiments 2 2 -
Protein Clusters 1,872 1,872 -
Identical Protein Groups 26,281 26,004 -
BioProject 15 13 -
BioSample 64 59 1
Assembly 61 59 -
Taxonomy 3 1 -

Comments and References:

Khayi S et al. (2015)
Khayi, S., Raoul des Essarts, Y., Quetu-Laurent, A., Moumni, M., Helias, V., and Faure, D. "Genomic overview of the phytopathogen Pectobacterium wasabiae strain RNS 08.42.1A suggests horizontal acquisition of quorum-sensing genes." Genetica (2015) 143:241-252.
Khayi S et al. (2016)
Khayi, S., Cigna, J., Chong, T.M., QuItu-Laurent, A., Chan, K.-G., Helias, V., and Faure, D. "Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov." Int. J. Syst. Evol. Microbiol. (2016) 66:5379-5383.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pectobacterium parmentieri meta-databases BacDive
8 records from this provider organism-specific BioCyc
2 records from this provider organism-specific Genomes On Line Database
16 records from this provider organism-specific Integrated Microbial Genomes
2 records from provider taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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