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Taxonomy browser (Parafrankia colletiae)

Parafrankia colletiae

Taxonomy ID: 573497 (for references in articles please use NCBI:txid573497)
current name
Parafrankia colletiae (Nouioui et al. 2023) Gtari 2023 in [Validation List No. 210 (2023)]
basionym:
Frankia colletiae Nouioui et al. 2023 in [Nouioui I et al. (2023)]
type strain of Frankia colletiae: personal::Cc1.17, DSM:43829, CECT:9313
homotypic synonym:
"Parafrankia colletiae" (Nouioui et al. 2022 (sic)) Gtari et al. 2022, effective name 1) in [Gtari M (2022)]
includes:
Frankia sp. Cc1.17
Frankia sp. DSM 43829
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Frankiales; Frankiaceae; Parafrankia
   Entrez records   
Database name Direct links Links from type
Nucleotide 397 397
Protein 12,842 -
Structure 1 -
Genome 1 -
Popset 2 -
PubMed Central 1 -
SRA Experiments 1 -
Protein Clusters 2 -
Identical Protein Groups 8,373 -
BioProject 2 -
BioSample 1 1
Assembly 1 -
Taxonomy 1 -

Notes:

Comments and References:
Validation List No. 210 (2023), PubMed: abstract
Validation List no. 210. "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2023) 73(3):005812.
Nouioui I et al. (2023), PubMed: abstract
Nouioui, I., Ghodhbane-Grari, F., Jando, M., Klenk, H.-P., and Gtari, M. "Frankia colletiae sp. nov., a nitrogen-fixing actinobacterium isolated from Colletia cruciata." Int. J. Syst. Evol. Microbiol. (2023) 73(1):005656.
Gtari M (2022), doi: 10.3389/fmicb.2022.1041425, PubMed: abstract
Gtari, M. "Taxogenomic status of phylogenetically distant Frankia clusters warrants their elevation to the rank of genus: A description of Protofrankia gen. nov., Parafrankia gen. nov., and Pseudofrankia gen. nov. as three novel genera within the family Frankiaceae." Front. Microbiol. (2022) 13:1041425.
Swanson E et al. (2017)
Swanson, E., Oshone, R., Nouioui, I., Abebe-Akele, F., Simpson, S., Morris, K., Thomas, W.K., Sen, A., Ghodhbane-Gtari, F., Gtari, M., and Tisa, L.S. "Permanent draft genome sequence for Frankia sp. strain Cc1.17, a nitrogen-fixing actinobacterium isolated from root nodules of Colletia cruciata." Genome Announc. (2016) 5:e00530-17.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Frankia sp. meta-databases BacDive
2 records from this provider organism-specific BioCyc
GOLD: Go0040514 organism-specific Genomes On Line Database
2687453743: Frankia colletiae Cc1.17 organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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