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Taxonomy browser (Rugamonas rubra)

Rugamonas rubra

Taxonomy ID: 758825 (for references in articles please use NCBI:txid758825)
current name
Rugamonas rubra Austin and Moss 1987 in [Validation List No. 23 (1987)]
type strain of Rugamonas rubra: personal::MOM 28/2/79, ATCC:43154, CCM:3730
homotypic synonym:
"Rugamonas rubra" Austin and Moss 1986, effective name in [Austin DA & Moss MO (1986)]
Rugamonas rubra Austin and Moss 1987 emend. Jeon et al. 2021, emended name in [Jeon D et al. (2021)]
homotypic synonym:
"Duganella rubra" (Austin and Moss 1987) Ma et al. 2023, effective name, nom. illeg. 1),2) in [Ma T et al. (2023b)]
NCBI BLAST name: b-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Telluria group; Rugamonas
   Entrez records   
Database name Direct links Links from type
Nucleotide 183 168
Protein 11,375 -
Structure 1 -
Genome 1 -
Popset 4 -
PubMed Central 25 -
SRA Experiments 1 -
Identical Protein Groups 6,770 -
BioProject 3 -
BioSample 1 1
Assembly 1 -
Taxonomy 1 -

Notes:

Comments and References:

Validation List No. 23 (1987)
Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB: List No. 23. International Journal of Systematic Bacteriology 37(2):179-179.
Austin DA & Moss MO (1986)
Austin, D.A., and Moss, M.O. "Numerical taxonomy of red-pigmented bacteria isolated from a lowland river, with the description of a new taxon, Rugamonas rubra gen. nov., sp. nov." Microbiology (1986) 132(7):1899-1909.
Jeon D et al. (2021), PubMed: abstract
Jeon, D., Kim, I.S., Choe, H., Kim, J.-S., and Lee, S.D. "Duganella aceris sp. nov., isolated from tree sap and proposal to transfer of Rugamonas aquatica and Rugamonas rivuli to the genus Duganella as Duganella aquatica comb. nov., with the emended description of the genus Rugamonas." Arch. Microbiol. (2021) 203(6):2843-2852.
Ma T et al. (2023b), PubMed: abstract
Ma, T., Xue, H., Piao, C., Jiang, N., and Li, Y. "Genome-based analyses of family Oxalobacteraceae reveal the taxonomic classification." Res. Microbiol. (2023) 174(7):104076.
Rugamonas
Yarza et al. (2013) note that phylogenetic analysis of the SSU rRNA gene from the type strain of Rugamonas place it in the family Oxalobacteraceae (class Betaproteobacteria).
VALIDATION LIST No. 23 (1987)
VALIDATION LIST No. 23. Int. J. Syst. Bacteriol. (1987) 37(2):179-180.
Yarza P et al. (2013)
Yarza, P., Sproer, C., Swiderski, J., Mrotzek, N., Spring, S., Tindall, B.J., Gronow, S., Pukall, R., Klenk, H.-P., Lang, E., Verbarg, S., Crouch, A., Lilburn, T., Beck, B., Unosson, C., Cardew, S., Moore, E.R.B., Gomila, M., Nakagawa, Y., Janssens, D., De Vos, P., Peiren, J., Suttels, T., Clermont, D., Bizet, C., Sakamoto, M., Iida, T., Kudo, T., Kosako, Y., Oshida, Y., Ohkuma, Arahal, D.R., Spieck, E., Pommerening Roeser, A., Figge, M., Park, D., Buchanan, P., Cifuentes, A., Munoz, R., Euzeby, J.P., Schleifer, K.H., Ludwig, W., Amann, R., Glockner, F.O., and Rossello-Mora, R. "Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names." Syst. Appl. Microbiol. (2013) 36(1):69-73.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
GOLD: Go0099459 organism-specific Genomes On Line Database
2597490347: Rugamonas rubra ATCC 43154 organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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