Taxonomy browser (Limosilactobacillus fermentum)

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Taxonomy browser (Limosilactobacillus fermentum)

Limosilactobacillus fermentum

Taxonomy ID: 1613 (for references in articles please use NCBI:txid1613)

current name

Limosilactobacillus fermentum (Beijerinck 1901) Zheng et al. 2020 in [Zheng J et al. (2020)]

basionym:

Lactobacillus fermentum Beijerinck 1901 (Approved Lists 1980) emend. Dellaglio et al. 2004, nom. approb.¹⁾

type strain of Lactobacillus fermentum: ATCC :14931, CCUG :30138, CIP:102980, IFO :15885, BCCM/LMG :6902, NBRC :15885, NCCB:46038, NCDO:1750, NCIMB:11840, NRRL :B-4524, DSM :20052, JCM :1173

homotypic synonym:

"Lactobacterium fermentum" (Beijerinck 1901) van Steenberge 1920, effective name²⁾

includes:

Lactobacillus sp. NCIM 2165

NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Bacillus d" von Freudenreich 1895

heterotypic synonym

"Bacillus casei d" von Freudenreich and Thoni 1904

heterotypic synonym

Lactobacillus cellobiosus Rogosa et al. 1953 (Approved Lists 1980), nom. approb.³⁾

type strain of Lactobacillus cellobiosus: JCM :1137, CECT:562, BCCM/LMG :9846, DSM :20055, NRRL :B-1840, JCM :12530

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	44,045	41,247	443
Protein	301,149	284,261	-
Structure	3	3	-
Genome	1	1	-
Popset	265	265	-
GEO Datasets	66	66	-
PubMed Central	4,007	4,007	-
Gene	13,846	8,244	-
SRA Experiments	361	353	-
Protein Clusters	1,532	1,532	-
Identical Protein Groups	118,719	115,723	-
BioProject	218	201	-
BioSample	829	811	13
Assembly	347	332	4
PubChem BioAssay	12	12	-
Taxonomy	13	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Zheng J et al. (2020), PubMed: abstract

Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.

Lactobacillus cellobiosus = Lactobacillus fermentum?

The type strain of Lactobacillus cellobiosus (ATCC 11739 = CCRC 12194 = CECT 562 = CIP 102981 = DSM 20055 = LMG 9846 = NCFB 928 = JCM 1137 = HAMBI 68) is listed as Lactobacillus fermentum in the ATCC, CIP, DSMZ, and JCM catalogues of strains, and as Lactobacillus cellobiosus in the CECT, LMG, and HAMBI catalogues of strains.

Dellaglio F et al. (2004)

Dellaglio, F., Torriani, S., and Felis, G.E. "Reclassification of Lactobacillus cellobiosus Rogosa et al. 1953 as a later synonym of Lactobacillus fermentum Beijerinck 1901." Int. J. Syst. Evol. Microbiol. (2004) 54:809-812.

Falsen E et al. (1999) (reference with type strain information)

Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.

Rogosa M et al. (1953)

Rogosa, M. et al. "Species differentiation of oral lactobacilli from man including descriptions of Lactobacillus salivarius nov. spec. and Lactobacillus cellobiosus nov. spec." J. Bacteriol. (1953) 65:681-699. [No abstract available.]

Rogosa M & Hansen PA (1971)

Rogosa, M., and Hansen, P.A. "Nomenclatural considerations of certain species of Lactobacillus Beijerinck. Request for an opinion." Int. J. Syst. Bacteriol. (1971) 21:177-186. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Limosilactobacillus fermentum	meta-databases	BacDive
18 records from this provider	organism-specific	BioCyc
Lactobacillus cellobiosus Rogosa et al. 1953 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
15 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Lactobacillus fermentum	culture/stock collections	Global Catalogue of Microorganisms
44 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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