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Taxonomy browser (Bifidobacterium animalis)

Bifidobacterium animalis

Taxonomy ID: 28025 (for references in articles please use NCBI:txid28025)
current name
Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974 emend. Masco et al. 2004
type strain of Bifidobacterium animalis: CGMCC:1.2268, ATCC:25527, BCRC:14668, CCUG:24606, CCUG:33907, CIP:105419, DSM:20104, HAMBI:112, JCM:1190, KCTC:3125, BCCM/LMG:10508, NCFB:2242, NCIMB:702242, personal::R101-8
homotypic synonym:
"Bifidobacterium longum subsp. animalis biotype a" Mitsuoka 1969, effective name 1)
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 13,384 8,603 114
Protein 164,350 52,063 -
Structure 17 - -
Genome 1 1 -
Popset 54 53 -
GEO Datasets 154 17 -
PubMed Central 5,418 3,335 -
Gene 27,967 1 -
SRA Experiments 481 398 -
Protein Clusters 1,367 1,367 -
Identical Protein Groups 27,013 19,681 -
BioProject 155 76 -
BioSample 805 634 10
Assembly 229 140 -
PubChem BioAssay 4 4 -
Taxonomy 27 1 -

Notes:

Comments and References:

image:Bifidobacterium animalis
Cai Y et al. (2000)
Cai, Y., Matsumoto, M., and Benno, Y. "Bifidobacterium lactis Meile et al. 1997 is a subjective synonym of Bifidobacterium animalis (Mitsuoka 1969) Scardovi and Trovatelli 1974." Microbiol. Immunol. (2000) 44:815-820.
Klein G (2001)
Klein, G. "International Committee on Systematic Bacteriology. Subcommittee on the taxonomy of Bifidobacterium, Lactobacillus and related organisms. Minutes of the meetings, 22 and 23 September 1999, Veldhoven, The Netherlands." Int. J. Syst. Evol. Microbiol. (2001) 51:259-261. [No PubMed record available.]
Masco L et al. (2004)
Masco, L., Ventura, M., Zink, R., Huys, G., and Swings, J. "Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis comb. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov., comb. nov." Int. J. Syst. Evol. Microbiol. (2004) 54:1151-1157.
Mitsuoka T (1969)
Mitsuoka, T. "Vergleichende Untersuchungen uber die Bifidobakterien aus dem Berdauungstrakt von Menschen und Tieren." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. I (1969) 210:52-64. [No PubMed record available.]
Scardovi V & Trovatelli LD (1974)
Scardovi, V., and Trovatelli, L.D. "Bifidobacterium animalis (Mitsuoka) comb. nov. and the 'minimum' and 'subtile' groups of new bifidobacteria found in sewage." Int. J. Syst. Bacteriol. (1974) 24:21-28. [No PubMed record available.]
VALIDATION LIST No. 62 (1967) (Bifidobacterium lactis)
VALIDATION LIST No. 62. Int. J. Syst. Bacteriol. (1997) 47:915-916.
Ventura M & Zink R (2002)
Ventura, M., and Zink, R. "Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis." Appl. Environ. Microbiol. (2002) 68:6429-6434.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bifidobacterium animalis meta-databases BacDive
2 records from this provider organism-specific BioCyc
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bifidobacterium animalis culture/stock collections Global Catalogue of Microorganisms
13 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

Organism modifiers

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strain
01 [1 1 2 1569] 1001216st1_A3_BSD2780061688_150302 [1 18] 1001216st1_A7_D41t1_190614 [1 25] 1001216st1_B4_RTP21191_200730 [1 34]
1001216st1_B5_BSD2780061688b_171218 [1 27] 1001216st1_E10_1001713B170131_170501 [1 19] 1001216st1_E5_BSD2780061688b_171218 [1 17] 1001216st1_F2_1001274B_151102 [1 73]
1001216st1_G10_1001274B_151102 [1 76] 1001216st1_G3_D55t1_190419 [1 24] 1001216st1_G4_D41t1_190614 [1 29] 1001216st1_G6_D55t1_190419 [1 19]
1001713B170131_170501_H10 [1 20] 12 [3 2 1] 12894 [1] 43.8 [1]
4549dOx [2] 9950 [1 1 1] 9952 [1 1 1] A12_hRTP31088sv1_210526 [1 20]
A1_hRTP31088sv1_210526 [1 15] A6 [3 4 2 1622 7] AF53-2pH5A [1 18] AM04S-44 [1 16]
AM04S-46 [1 15] AM04S-56 [1 15] AM04S-57 [1 12] AM102-37 [1 14]
AM102-56 [1 17] AM104-27 [1 18] AM104-33 [1 15] ATA-LTC-Ba030100 [1 98]
ATCC 25527 strain ATCC 25527 [1 1 25 8 1561] of Bifidobacterium animalis subsp. animalis ATCC 25527 ATCC 27536 [1 1 44 1569] ATCC 27672 [1 1 29 1 1538] ATCC 27673 strain ATCC 27673 [2 2 48 3134] of Bifidobacterium animalis subsp. lactis ATCC 27673
ATCC 27674 [1 1 42 1565] B01 [1 3 1534 2] B0456 [1 1] B06 [1 1 2 1579]
B106 [1 1] B11_hRTP31088sv1_210526 [1 26] B2_hRTP31088sv1_210526 [1 18] B50 [1 1]
B52 [1 1] B70 [1 1] B77 [1 1] B7_hRTP31088sv1_210526 [1 22]
B83 [2 2 1] BA1-1 [1 1] BB-12 [2 2 1 125 5 3050 2] BCRC14668 [1 1 1]
BIOML-A1 [2 28 1573 1] BIOML-A2 [2 28 1575 1] BIOML-A3 [2 30 1579 1] BL2 [1]
BL3 [1 1 2 1532] BSD2780061688st1_E5 [1 32] Bb 12 strain Bb 12 of Bifidobacterium animalis subsp. lactis BB-12 Bb12 strain Bb12 of Bifidobacterium animalis subsp. lactis BB-12
BfH [1 1 2] Bi30 [2 1] Bifidobacterium animalis strain PTA-9175 [1] C10 [1 1 1]
C11_hRTP31088sv1_210526 [1 25] C3_hRTP31088sv1_210526 [1 23] C64MR [1 1] CACC 789 [1]
CICC 6165 [2 1] CIP 105265T [1 1] CM MSU 469 [1] CM MSU 470 [1]
CM MSU 471 [1] CM MSU 472 [1] CM MSU 473 [1] CM18M_72 [1 20 1]
CUL20 [1 1 121] D1 [24 4 1] D1_hRTP31088sv1_210526 [1 20] D6_hRTP31088sv1_210526 [1 20]
DBF 1007 [1] DBF 1307 [1] DBF 1905 [1] DFI.7.35 [1 67]
DR2-1 [1] DRMB [1] DS11_2 [1 32 1576 1] DS15_2 [1 36 1569 1]
DS1_2 [1 32 1576 1] DS20_2 [1 124 1590 1] DS2_2 [1 34 1566 1] DSM 10140 strain DSM 10140 [1 8 21 4 1593] of Bifidobacterium animalis subsp. lactis DSM 10140
DSM 20104 [11 10 11] DSM 27674 [1 1] DSM10140 strain DSM 10140 [1 8 21 4 1593] of Bifidobacterium animalis subsp. lactis DSM 10140 E43 [3 1 2]
F1-7 [1] FC13646 [1] FD-Bi.an.101 [1] FD-Bi.an.111 [1]
FHHMB OV11-11ch [2 1] G12_hRTP31088sv1_210526 [1 21] G14 [1 1] G1_hRTP31088sv1_210526 [1 21]
G6_hRTP31088sv1_210526 [1 23] H2 [2 2] H8 [1 1 1] HN22 [1]
HP-B1124 [2] HT18 [1] HT19 [1] HT5 [1]
HUMB19353 [1] HY8002 [1 1 2] I1 [2 2] I1DS1 [1]
III-1 [2 2 1] III-6 [2 2 1] IPLA 4549 [3 1 1] J063 [1 32 1571 1]
J218 [1 32 1561 1] J231 [1 32 1561 1] JB-1 [2 2 1] JCM 1190 [6 1]
JCM 1253 [2] JCM 7117 [2] JCM1190 [1 1 1] JSQ1 [1 1]
K3 [2 2] KCTC 3219 strain KCTC 3219 [3 1 2] of Bifidobacterium animalis subsp. animalis KL412 [1 3] KO3 [2 2]
KO4 [2 2] KS9 [2] LH_990 [1 37] LMG 18900 [2 2 2]
LMG 18906 [4 2 11] LZCL [1 1] MS3 [1] MSK.22.112 [1 29]
MSK.22.126 [1 28] MSK.22.129 [1 26] MSK.22.133 [1 29] MSK.22.135 [1 32]
MSK.22.140 [1 31] MSK.22.142 [1 29] MSK.23.122 [1 152] MSK.23.126 [1 151]
MSK.23.127 [1 261] MSK.23.128 [1 71] MSK.23.129 [1 93] MSK.23.131 [1 93]
MSK.23.137 [1 76] MSK.23.138 [1 180] MSK.23.140 [1 273] MSK.23.142 [1 109]
MSMC83 [1] NBIF-10 [1 1] NBIF-11 [1 1] NBIF-3 [1 1]
NBIF-4 [1 1] NBIF-5 [1 1] NBIF-6 [1 1] NBIF-8 [1 1]
NBIF-9 [1 1] NBP [1] NCC 239 [2 2] NCC 330 [1 1]
NCC 363 [1 1] NCC 402 [2 2] NCC221 [1] NCC239 [2 2]
NCC311 [2 2] NCC363 [2 2] NCC383 [2 2] NCC402 [2 2]
OM05-7AA [1 36 1572] OS22 [1 1] PNW2 [1] Probio-M8 [1 1 2 1625]
R11 [1 1] RC150_19034_HHC [1 79 1] RH [1 1 2 1539] SJ19 [1 1]
SSBB1 [1] SSBB2 [1] TF04-14 [1 32 1576] TF09-6A [1 15]
TK-J6A [1 2 1577] TMPC 10246 [1] TMPC 10247 [1] V1582 [1]
V1587 [1] W [1] Y 93050 [2] Y 96007 [1]
Y 98067 [1] YIT 4090 [1] YIT 4119 [1] YIT 4121 [2]
YL2 [4 13 1 6272 2] ZB53 [1] ZB56 [1] ZB57 [1]
ZGP-Ban.35 [1 1] ZGP-Ban.36 [1 1] ZGP-Ban.37 [1 1] ZK-77 [1 46]
ban1-6101-FNS-D20-50 [1] co_0103 [1 30 1581 1] mkb4 [1]
substrain
DSM 10140 strain DSM 10140 [1 8 21 4 1593] of Bifidobacterium animalis subsp. lactis DSM 10140
isolate
A82_75.BA.DSS [2 28] BifB1 [1 1] BifB2 [1 1] BifB21 [1 1]
BifB22 [1 1] BifC1 [1 1] BifD1 [1 1] BifE1 [1 1]
BifH1 [1 1] Bifido_08 [151] Bifido_11 [93] DOME_MAG_14863 [1 1]
E07192-L1_cleanbin_000034 [118] ERR1190858-bin.7 [84] L3_114_000G1_dasL3_114_000G1_concoct_26 [2 1] MGBC116812 [7]
MGYG-HGUT-02459 [2] N4_131_000G1_dasN4_131_000G1_abawaca.33 [1 1] NPLps01.et [1 1] NPLps03.gc [1 1]
NPLps05.it [1 1] NPLps06.ab [1 1] NPLps07.nf [1 1] RAGGC_8 [1 1]
SRR14862906_bin.1_metawrap_v1.3_MAG [26] SUG2222 [1 1] SUG292 [1 1] T0_METABAT__9 [1 1]
UR1 [1] contig_37975.circular [1 1] extra-ERR2059933.49_1677761352 [307] extra-SRR5580761.45_1677796860 [6]
extra-SRR5580762.4_1677796896 [8] extra-SRR5580763.64_1677796964 [4]
nat-host
Homo sapiens [193] Mus musculus [11] Sus scrofa [1] Sus scrofa domesticus [1]
rat [4] swine [1]
sub-species
animalis Bifidobacterium animalis subsp. animalis
synonym
Bifidobacterium lactis [7 2 6]
culture-collection
ATCC:25527 [1 7 4 1541] IMAU:FB114 [1]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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