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ASM41847v1

Organism name:
Lacticaseibacillus rhamnosus LOCK900 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: LOCK900
BioSample:
SAMN02603328
BioProject:
PRJNA196481
Submitter:
IBB PAS
Date:
2013/07/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000418475.1 (latest)
RefSeq assembly accession:
GCF_000418475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler De Novo Assembler v. 2.6
Genome coverage:
81x
Sequencing technology:
Sanger dideoxy sequencing; 454; Illumina

IDs: 38861 [UID] 726268 [GenBank] 734628 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 633 assemblies for this organism

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History (Show revision history)

Comment

Source DNA is available from Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland; Bacteria available from Centre of Industrial Microorganisms Collection LOCK 105 Institute of Fermentation Technology and Microbiology, LODZ, POLAND; dorota.kregiel@p.lodz.pl
The annotation was added by ... the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/11/2023 01:02:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,686
CDSs (total)::2,609
Genes (coding)::2,576
CDSs (with protein)::2,576
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::17 of 33
Pseudo Genes (incomplete)::10 of 33
Pseudo Genes (internal stop)::9 of 33
Pseudo Genes (multiple problems)::3 of 33
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,883,376
Total ungapped length2,883,376
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000418485.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP005484.1=NC_021723.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,883,376

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosus LOCK900Lacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7093.5290.23
Best-match type97.7093.5290.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna