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ASM94084v1

Organism name:
Propionibacterium freudenreichii subsp. freudenreichii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 20271T
BioSample:
SAMN03263638
BioProject:
PRJNA269789
Submitter:
University of Helsinki
Date:
2015/03/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000940845.1 (latest)
RefSeq assembly accession:
GCF_000940845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRTAnalysis v. 2.1.0; HGAP2
Genome coverage:
198x
Sequencing technology:
PacBio RS2

IDs: 304481 [UID] 1655858 [GenBank] 1667098 [RefSeq]

See Genome Information for Propionibacterium freudenreichii

There are 121 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000940845.1-RS_2024_03_29
Annotation Date::03/29/2024 09:43:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,351
CDSs (total)::2,297
Genes (coding)::2,248
CDSs (with protein)::2,248
Genes (RNA)::54
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::13 of 49
Pseudo Genes (incomplete)::35 of 49
Pseudo Genes (internal stop)::5 of 49
Pseudo Genes (multiple problems)::4 of 49
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,649,166
Total ungapped length2,649,166
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000940855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010341.1=NZ_CP010341.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,649,166

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Propionibacterium freudenreichii subsp. freudenreichiiPropionibacterium freudenreichii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000426605.1Propionibacterium acidifacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.5110.819.41

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected