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ASM294532v1

Organism name:
Methanococcus maripaludis (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 2067
BioSample:
SAMN08466362
BioProject:
PRJNA432904
Submitter:
Goettingen Genomics Laboratory
Date:
2018/02/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002945325.1 (latest)
RefSeq assembly accession:
GCF_002945325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 20170911
Genome coverage:
107
Sequencing technology:
Illumina; Nanopore

IDs: 1589601 [UID] 6088328 [GenBank] 6150998 [RefSeq]

See Genome Information for Methanococcus maripaludis

There are 29 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002945325.1-RS_2024_03_28
Annotation Date::03/28/2024 03:14:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,874
CDSs (total)::1,824
Genes (coding)::1,821
CDSs (with protein)::1,821
Genes (RNA)::50
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::38
ncRNAs::2
Pseudo Genes (total)::3
CDSs (without protein)::3
Pseudo Genes (ambiguous residues)::0 of 3
Pseudo Genes (frameshifted)::1 of 3
Pseudo Genes (incomplete)::1 of 3
Pseudo Genes (internal stop)::1 of 3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,714,918
Total ungapped length1,714,918
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002945345.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP026606.1=NZ_CP026606.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,714,918

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcus maripaludisMethanococcus maripaludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000017165.1Methanococcus vannieliitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.6389.5987.65
Best-match type81.3922.0822.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchAssembly is type-strain, failed to match other type-strains on its species