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ASM1283999v1

Organism name:
Thermoanaerobacterium sp. (firmicutes)
Taxonomy check:
OK
Isolate:
AS04akNAM_44
BioSample:
SAMN13893589
BioProject:
PRJNA602310
Submitter:
Technical University of Denmark
Date:
2020/04/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_012839995.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DUMG01
Assembly method:
Megahit v. 1.1.1
Expected final version:
no
Genome coverage:
8667.52693408x
Sequencing technology:
Illumina HiSeq2000

IDs: 7003431 [UID] 19259108 [GenBank]

See Genome Information for Thermoanaerobacterium sp.

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/10/2020 12:17:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,830
CDSs (total)::2,760
Genes (coding)::2,701
CDSs (with protein)::2,701
Genes (RNA)::70
rRNAs::5, 3, 1 (5S, 16S, 23S)
complete rRNAs::5 (5S)
partial rRNAs::3, 1 (16S, 23S)
tRNAs::56
ncRNAs::5
Pseudo Genes (total)::59
CDSs (without protein)::59
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::20 of 59
Pseudo Genes (incomplete)::39 of 59
Pseudo Genes (internal stop)::7 of 59
Pseudo Genes (multiple problems)::6 of 59
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,744,112
Total ungapped length2,744,112
Number of contigs124
Contig N5097,159
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,744,1121242,744,11297,15900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoanaerobacterium sp.Thermoanaerobacterium sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000189775.3Thermoanaerobacterium xylanolyticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.2474.9381.13

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna