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ASM1158v1

Organism name:
Methanococcus maripaludis S2 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: S2
BioSample:
SAMEA3138215
BioProject:
PRJNA10632
Submitter:
University of Washington
Date:
2004/03/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000011585.1 (latest)
RefSeq assembly accession:
GCF_000011585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 32708 [UID] 12388 [GenBank] 32708 [RefSeq]

See Genome Information for Methanococcus maripaludis

There are 29 assemblies for this organism

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History (Show revision history)

Comment

This strain was formerly known as LL.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/17/2024 00:43:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,797
CDSs (total)::1,747
Genes (coding)::1,743
CDSs (with protein)::1,743
Genes (RNA)::50
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::38
ncRNAs::2
Pseudo Genes (total)::4
CDSs (without protein)::4
Pseudo Genes (ambiguous residues)::0 of 4
Pseudo Genes (frameshifted)::3 of 4
Pseudo Genes (incomplete)::1 of 4
Pseudo Genes (internal stop)::0 of 4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,661,137
Total ungapped length1,661,137
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000011595.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome BX950229.1=NC_005791.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,661,137

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcus maripaludis S2Methanococcus maripaludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3192.5187.67
Best-match type97.3192.5187.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna