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ASM19411v1

Organism name:
Lactobacillus amylovorus GRL1118 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: GRL1118
BioSample:
SAMN02603307
BioProject:
PRJNA42079
Submitter:
Helsinki University, Finland
Date:
2011/03/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000194115.1 (latest)
RefSeq assembly accession:
GCF_000194115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 375258 [UID] 254098 [GenBank] 375258 [RefSeq]

See Genome Information for Lactobacillus amylovorus

There are 105 assemblies for this organism

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History (Show revision history)

Comment

Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
For source information contact Ravi Kant (ravi.kant.bhardwaj@gmail.com).
The annotation was added by the NCBI Prokaryotic ... Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/09/2023 01:16:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,015
CDSs (total)::1,938
Genes (coding)::1,834
CDSs (with protein)::1,834
Genes (RNA)::77
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::62
ncRNAs::3
Pseudo Genes (total)::104
CDSs (without protein)::104
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::56 of 104
Pseudo Genes (incomplete)::47 of 104
Pseudo Genes (internal stop)::32 of 104
Pseudo Genes (multiple problems)::27 of 104
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,977,087
Total ungapped length1,977,087
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000194125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002609.1=NC_017470.1
Plasmid p1CP002610.1=NC_017471.1
Plasmid p2CP002611.1=NC_017472.1

Assembly statistics

MoleculeTotal
Length
All1,977,087
Chromosome 1,894,401
Plasmid p14,541
Plasmid p278,145

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus amylovorus GRL1118Lactobacillus amylovorus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002706375.1Lactobacillus amylovorus DSM 20531suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002706375.1Lactobacillus amylovorussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3881.8474.48
Best-match type97.3881.8474.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna