U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM29291v1

Organism name:
Burkholderia cepacia GG4 (b-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: GG4
BioSample:
SAMN02604072
BioProject:
PRJNA66091
Submitter:
U Malaya
Date:
2012/08/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000292915.1 (latest)
RefSeq assembly accession:
GCF_000292915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 419468 [UID] 417578 [GenBank] 419468 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/01/2024 01:22:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,973
CDSs (total)::5,904
Genes (coding)::5,754
CDSs (with protein)::5,754
Genes (RNA)::69
rRNAs::4, 2, 2 (5S, 16S, 23S)
complete rRNAs::4, 2, 2 (5S, 16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::150
CDSs (without protein)::150
Pseudo Genes (ambiguous residues)::0 of 150
Pseudo Genes (frameshifted)::32 of 150
Pseudo Genes (incomplete)::132 of 150
Pseudo Genes (internal stop)::18 of 150
Pseudo Genes (multiple problems)::26 of 150
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,467,321
Total ungapped length6,467,321
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000292925.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP003774.1=NC_018513.1
Chromosome 2CP003775.1=NC_018514.1

Assembly statistics

MoleculeTotal
Length
All6,467,321
Chromosome 13,463,655
Chromosome 23,003,666

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepacia GG4Burkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000473485.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016836765.1Burkholderia diffusasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.0477.4858.22
Best-match type92.7876.8170.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna