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ASM38756v1

Organism name:
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ZN7a-9
BioSample:
SAMN02471706
BioProject:
PRJNA171594
Submitter:
University of Copenhagen
Date:
2013/05/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000387565.1 (latest)
RefSeq assembly accession:
GCF_000387565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ALPY01
Assembly method:
CLC Genomics Workbench v. 4.6.1
Genome coverage:
70.0x
Sequencing technology:
Illumina HiSeq 2000

IDs: 651278 [UID] 651278 [GenBank] 723548 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length1,730,812
Total ungapped length1,730,812
Number of contigs75
Contig N5057,175
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)75

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,730,812751,730,81257,17500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046Lactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001888925.1Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001888925.1Lactobacillus delbrueckiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.9791.46
Best-match type99.9899.9791.46

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna