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Source database (GenBank or RefSeq) File type

ASM38967v2

Organism name:: Lactobacillus acidophilus La-14 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: La-14
BioSample:: SAMN02603216
BioProject:: PRJNA196176
Submitter:: DuPont
Date:: 2013/06/21
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000389675.2 (latest)
RefSeq assembly accession:: GCF_000389675.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SeqMan NGen v. 4.1.2
Reference guided assembly:: CP000033.3
Genome coverage:: 149
Sequencing technology:: 454

IDs: 41091 [UID] 737278 [GenBank] 752458 [RefSeq]

See Genome Information for Lactobacillus acidophilus

Pathogen Detection Resources

There are 125 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000389675.2	=	GCF_000389675.2	ASM38967v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_000389675.1	=	GCF_000389675.1	ASM38967v1	Complete Genome	Replaced GenBank, Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/03/2024 03:32:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,924
CDSs (total)::1,848
Genes (coding)::1,786
CDSs (with protein)::1,786
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::40 of 62
Pseudo Genes (incomplete)::15 of 62
Pseudo Genes (internal stop)::21 of 62
Pseudo Genes (multiple problems)::12 of 62
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,991,579
Total ungapped length	1,991,579
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.91	99.34	98.43
Best-match type	99.91	99.34	98.43

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ASM38967v2

See Genome Information for Lactobacillus acidophilus

Pathogen Detection Resources

There are 125 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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