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DCH402_1.0

Organism name:: Dickeya chrysanthemi NCPPB 402 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: NCPPB 402
BioSample:: SAMN02470094
BioProject:: PRJNA172902
Submitter:: James Hutton Institute
Date:: 2013/06/20
Assembly type:: na
Assembly level:: Chromosome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000406105.1 (latest)
RefSeq assembly accession:: GCF_000406105.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AOOA01
Assembly method:: Newbler v. 2.5.3
Expected final version:: no
Genome coverage:: 18.0x
Sequencing technology:: 454

IDs: 711448 [UID] 707818 [GenBank] 711448 [RefSeq]

See Genome Information for Dickeya chrysanthemi

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000406105.1	=	GCF_000406105.1	DCH402_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Reference guided assembly based on Dickeya zeae Ech1591 PRJNA59297 in NC_012912

Bacteria available from The Food and Environment Research Agency (FERA), York, UK

Global statistics

Total sequence length	4,700,353
Total ungapped length	4,694,753
Gaps between scaffolds	0
Number of scaffolds	21
Scaffold N50	4,669,628
Scaffold L50	1
Number of contigs	77
Contig N50	170,949
Contig L50	10
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	77

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome	CM001974.1	=	NZ_CM001974.1	0
unplaced	n/a	n/a	n/a	20

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	4,700,353	21	4,694,753	4,669,628	56
Chromosome	4,669,628	1	4,664,028	4,669,628	56
unplaced	30,725	20	30,725	2,146	0

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	87.77	75.64	76.01

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DCH402_1.0

See Genome Information for Dickeya chrysanthemi

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

Comment

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