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ASM42398v1

Organism name:
Butyrivibrio fibrisolvens YRB2005 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: YRB2005
BioSample:
SAMN02440828
BioProject:
PRJNA185684
Submitter:
DOE Joint Genome Institute
Date:
2013/07/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000423985.1 (latest)
RefSeq assembly accession:
GCF_000423985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AUJA01
Assembly method:
Unknown program v. before 2013-05-07
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 59491 [UID] 775908 [GenBank] 1116008 [RefSeq]

See Genome Information for Butyrivibrio fibrisolvens

There are 19 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1012761
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Butyrivibrio fibrisolvens YRB2005
sequencing_meth::WGS
GOLD Stamp ID::Gi22238
Gram Staining::Gram+
##MIGS-Data-END##

Global statistics

Total sequence length4,651,802
Total ungapped length4,651,344
Gaps between scaffolds0
Number of scaffolds81
Scaffold N50128,442
Scaffold L5011
Number of contigs82
Contig N50125,064
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,651,802814,651,344128,44210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyrivibrio fibrisolvens YRB2005Butyrivibrio fibrisolvens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_037113525.1Butyrivibrio fibrisolvenssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_037113525.1Butyrivibrio fibrisolvenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type89.6835.9033.84
Best-match type89.6835.9033.84

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna