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ASM43991v2

Organism name:
Lactobacillus gasseri 2016 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 2016
BioSample:
SAMN02470136
BioProject:
PRJNA208361
Submitter:
Kingston University
Date:
2022/01/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000439915.2 (latest)
RefSeq assembly accession:
GCF_000439915.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.0
Expected final version:
yes
Genome coverage:
93.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 11772371 [UID] 30995668 [GenBank] 31035078 [RefSeq]

See Genome Information for Lactobacillus gasseri

There are 342 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Andrey Karlyshev, Kingston University London, United Kingdom

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/05/2024 13:54:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,863
CDSs (total)::1,763
Genes (coding)::1,720
CDSs (with protein)::1,720
Genes (RNA)::100
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::76
ncRNAs::3
Pseudo Genes (total)::43
CDSs (without protein)::43
Pseudo Genes (ambiguous residues)::0 of 43
Pseudo Genes (frameshifted)::26 of 43
Pseudo Genes (incomplete)::14 of 43
Pseudo Genes (internal stop)::13 of 43
Pseudo Genes (multiple problems)::9 of 43
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,892,784
Total ungapped length1,892,784
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000439925.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP090409.1=NZ_CP090409.1
Plasmid pLG2016CP090410.1=NZ_CP090410.1

Assembly statistics

MoleculeTotal
Length
All1,892,784
Chromosome 1,866,966
Plasmid pLG201625,818

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus gasseri 2016Lactobacillus gasseri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000014425.1Lactobacillus gasseri ATCC 33323 = JCM 1131type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000014425.1Lactobacillus gasseritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9195.6195.53
Best-match type99.9195.6195.53

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna