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ASM51237v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: P101
BioSample:
SAMN02641647
BioProject:
PRJNA210654
Submitter:
Washington State University
Date:
2013/12/31
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000512375.1 (latest)
RefSeq assembly accession:
GCF_000512375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis (HGAP) v. 2.0.0
Sequencing technology:
PacBio

IDs: 88661 [UID] 884598 [GenBank] 1577108 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 262 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Enterobacter cloacae P101" to "Enterobacter ludwigii" in March 2019.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 01:20:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,269
CDSs (total)::5,135
Genes (coding)::5,077
CDSs (with protein)::5,077
Genes (RNA)::134
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::102
ncRNAs::7
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::30 of 58
Pseudo Genes (incomplete)::35 of 58
Pseudo Genes (internal stop)::11 of 58
Pseudo Genes (multiple problems)::15 of 58
Pseudo Genes (short protein)::1 of 58
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_000512375.1
Current Name::Enterobacter ludwigii
Previous Name::Enterobacter cloacae P101
Date Updated::2019-03-07
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000818595.1
A1 Name::Enterobacter ludwigii
A1 ANI::98.96994%
A1 Query Coverage::84.33%
A1 Subject Coverage::91.43%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000025565.1
A2 Name::Enterobacter cloacae P101
A2 ANI::88.14178%
A2 Query Coverage::75.05%
A2 Subject Coverage::71.99%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,369,929
Total ungapped length5,369,929
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000512385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006580.1=NZ_CP006580.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,369,929

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019047005.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019047005.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9784.3991.68
Best-match type98.9784.3991.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna