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Source database (GenBank or RefSeq) File type

ASM61532v1

Organism name:

Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437 (firmicutes)

Taxonomy check:

Infraspecific name:

Strain: JCM 1149

BioSample:

SAMD00012694

BioProject:

PRJDB641

Submitter:

The University of Tokyo

Date:

2014/03/31

Assembly type:

Assembly level:

Contig

Genome representation:

full

Relation to type material:

assembly from type material

Excluded from RefSeq:

many frameshifted proteins

GenBank assembly accession:

GCA_000615325.1 (latest)

RefSeq assembly accession:

GCF_000615325.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

BALV01

Assembly method:

Newbler v. 2.8

Genome coverage:

34x

Sequencing technology:

Ion PGM

IDs: 139201 [UID] 988578 [GenBank] 1083788 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1248 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000615325.1	=	GCF_000615325.1	ASM61532v1	Contig	Latest GenBank, RefSeq suppressed

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

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Global statistics

Total sequence length	3,209,456
Total ungapped length	3,209,456
Number of contigs	39
Contig N50	220,833
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	39

	ANI	Query coverage	Subject coverage
Declared type	99.97	100.00	98.75
Best-match type	99.97	100.00	98.75

Assembly

Genome Assembly

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ASM61532v1

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1248 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result