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ASM72502v1

Organism name:
Oenococcus oeni (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: OM22
BioSample:
SAMN02893932
BioProject:
PRJNA253810
Submitter:
University of Foggia
Date:
2014/07/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000725025.1 (latest)
RefSeq assembly accession:
GCF_000725025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JPEK01
Assembly method:
Ray v. v2.2.0
Expected final version:
yes
Genome coverage:
1000.0x
Sequencing technology:
Illumina GAIIx

IDs: 195771 [UID] 1166348 [GenBank] 1358468 [RefSeq]

See Genome Information for Oenococcus oeni

There are 256 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/01/2014 11:11:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 438450)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::1,895
CDS::1,772
Pseudo Genes::69
rRNAs::9 ( 5S, 16S, 23S )
tRNAs::45
ncRNA::0
Frameshifted Genes::54
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,862,817
Total ungapped length1,862,817
Number of contigs23
Contig N50137,811
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)23

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,862,817231,862,817137,81100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oenococcus oeniOenococcus oeni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000372485.1Oenococcus oeni DSM 20252 = AWRIB129type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000372485.1Oenococcus oenitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8089.1895.60
Best-match type99.8089.1895.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna