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ASM81859v1

Organism name:
Enterobacter ludwigii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EN-119
BioSample:
SAMN03246119
BioProject:
PRJNA268890
Submitter:
Chengdu Military General Hospital
Date:
2015/01/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000818595.1 (latest)
RefSeq assembly accession:
GCF_000818595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JTLO01
Assembly method:
HGAP protocol,SMRT Analysis v. 2.3.0
Expected final version:
yes
Genome coverage:
68.93x
Sequencing technology:
PacBio

IDs: 242921 [UID] 1477178 [GenBank] 1480038 [RefSeq]

See Genome Information for Enterobacter ludwigii

There are 262 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/02/2014 12:30:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 452286)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::4,626
CDS::4,459
Pseudo Genes::51
rRNAs::29 ( 5S, 16S, 23S )
tRNAs::86
ncRNA::1
Frameshifted Genes::23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,952,770
Total ungapped length4,952,770
Number of contigs2
Contig N504,857,439
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,952,77024,952,7704,857,43900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter ludwigiiEnterobacter ludwigii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001750725.1Enterobacter ludwigiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001750725.1Enterobacter ludwigiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna