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ASM82855v1

Organism name:
Methanococcus maripaludis OS7 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: OS7
BioSample:
SAMD00170764
BioProject:
PRJDA34065
Submitter:
National Institute of Technology and Evaluation
Date:
2014/10/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000828555.1 (latest)
RefSeq assembly accession:
GCF_000828555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 247951 [UID] 1504338 [GenBank] 7504938 [RefSeq]

See Genome Information for Methanococcus maripaludis

There are 29 assemblies for this organism

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History (Show revision history)

Comment

Please visit our web site. URL:http://www.bio.nite.go.jp/ 

DOGAN ; Database of Genomes Analyzed at NITE. The database contains genome sequence data, physical maps and the genomic and proteomic data of the microorganisms analyzed.
URL:http://www.bio.nite.go.jp/dogan/Top

The microbial strain and microbial genomic DNA clones ... used for the sequencing project are available through the NBRC. URL:http://www.nbrc.nite.go.jp/e/index.html
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2024 01:04:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,896
CDSs (total)::1,850
Genes (coding)::1,838
CDSs (with protein)::1,838
Genes (RNA)::46
rRNAs::3, 2, 2 (5S, 16S, 23S)
complete rRNAs::3, 2, 2 (5S, 16S, 23S)
tRNAs::37
ncRNAs::2
Pseudo Genes (total)::12
CDSs (without protein)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::6 of 12
Pseudo Genes (incomplete)::7 of 12
Pseudo Genes (internal stop)::1 of 12
Pseudo Genes (multiple problems)::2 of 12
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,749,749
Total ungapped length1,749,749
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000828565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP011528.1=NZ_AP011528.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,749,749

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcus maripaludis OS7Methanococcus maripaludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017875815.1Methanococcus maripaludissyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3888.3888.22
Best-match type97.3888.3888.22

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna