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ASM98182v1

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Carb01 63
BioSample:
SAMN03389320
BioProject:
PRJNA281807
Submitter:
Maasstad Hospital
Date:
2015/04/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000981825.1 (latest)
RefSeq assembly accession:
GCF_000981825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC NGS Cell v. 6.5.1
Expected final version:
yes
Genome coverage:
98.0x
Sequencing technology:
PacBio

IDs: 326601 [UID] 1741388 [GenBank] 1751378 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30756 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/06/2024 08:51:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,206
CDSs (total)::7,121
Genes (coding)::6,997
CDSs (with protein)::6,997
Genes (RNA)::85
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::65
ncRNAs::8
Pseudo Genes (total)::124
CDSs (without protein)::124
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::41 of 124
Pseudo Genes (incomplete)::90 of 124
Pseudo Genes (internal stop)::9 of 124
Pseudo Genes (multiple problems)::15 of 124
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,497,593
Total ungapped length7,497,593
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000981835.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011317.1=NZ_CP011317.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,497,593

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024169805.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3280.6393.82
Best-match type99.3280.6393.82

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna