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ASM104568v1

Organism name:
Pseudomonas aeruginosa DSM 50071 = NBRC 12689 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 50071
BioSample:
SAMN03761153
BioProject:
PRJNA285827
Submitter:
Okinawa Institute of Advanced Sciences
Date:
2015/07/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001045685.1 (latest)
RefSeq assembly accession:
GCF_001045685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP3 v. 2.3.0
Genome coverage:
843x
Sequencing technology:
PacBio

IDs: 359461 [UID] 1853808 [GenBank] 1857048 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30746 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2023 11:03:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,863
CDSs (total)::5,783
Genes (coding)::5,747
CDSs (with protein)::5,747
Genes (RNA)::80
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::64
ncRNAs::4
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::16 of 36
Pseudo Genes (incomplete)::22 of 36
Pseudo Genes (internal stop)::1 of 36
Pseudo Genes (multiple problems)::3 of 36
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,317,050
Total ungapped length6,317,050
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001045695.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012001.1=NZ_CP012001.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,317,050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosa DSM 50071 = NBRC 12689Pseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001457615.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001457615.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna