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ASM119000v1

Organism name:
Lactobacillus delbrueckii subsp. allosunkii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 17838
BioSample:
SAMN03852102
BioProject:
PRJNA289290
Submitter:
ChunLab, Inc
Date:
2015/07/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001190005.1 (latest)
RefSeq assembly accession:
GCF_001190005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGHR01
Assembly method:
CLC Genomics Workbench v. 6.5.1
Expected final version:
no
Genome coverage:
565.0x
Sequencing technology:
Illumina MiSeq

IDs: 432381 [UID] 2033758 [GenBank] 2220998 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/14/2015 13:26:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::1,906
CDS::1,705
Pseudo Genes::116
CRISPR Arrays::2
rRNAs::10 (5S, 16S, 23S)
tRNAs::75
ncRNA::0
Frameshifted Genes::51
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,945,263
Total ungapped length1,945,263
Number of contigs32
Contig N50121,749
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,945,263321,945,263121,74900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. allosunkiiLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001888965.1Lactobacillus delbrueckii subsp. allosunkiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001888965.1Lactobacillus delbrueckiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8596.91
Best-match type99.9999.8596.91

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna