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ASM141149v1

Organism name:
Burkholderia cepacia ATCC 25416 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: UCB 717
BioSample:
SAMN04167160
BioProject:
PRJNA298860
Submitter:
Kyungpook National University
Date:
2015/10/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001411495.1 (latest)
RefSeq assembly accession:
GCF_001411495.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS HGAP Assembly Protocol v.2.0 in SMRT analysis v. 2.3.0
Genome coverage:
100.4x
Sequencing technology:
PacBio

IDs: 558951 [UID] 2510548 [GenBank] 2595408 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 08:30:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,937
CDSs (total)::7,843
Genes (coding)::7,716
CDSs (with protein)::7,716
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::127
CDSs (without protein)::127
Pseudo Genes (ambiguous residues)::0 of 127
Pseudo Genes (frameshifted)::51 of 127
Pseudo Genes (incomplete)::101 of 127
Pseudo Genes (internal stop)::19 of 127
Pseudo Genes (multiple problems)::37 of 127
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,605,945
Total ungapped length8,605,945
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001411505.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP012981.1=NZ_CP012981.1
Chromosome 2CP012982.1=NZ_CP012982.1
Chromosome 3CP012983.1=NZ_CP012983.1
Plasmid pBC25416CP012984.1=NZ_CP012984.1

Assembly statistics

MoleculeTotal
Length
All8,605,945
Chromosome 13,791,734
Chromosome 23,408,190
Chromosome 31,196,214
Plasmid pBC25416209,807

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepacia ATCC 25416Burkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006094315.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094315.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.5799.94
Best-match type99.9999.5799.94

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna