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ASM143389v1

Organism name:
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 = CIP 76.13 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 20079
BioSample:
SAMN02369388
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001433895.1 (latest)
RefSeq assembly accession:
GCF_001433895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZCS01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 578431 [UID] 2581278 [GenBank] 2681588 [RefSeq]

See Genome Information for Lactobacillus acidophilus

There are 125 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,954,043
Total ungapped length1,953,662
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50167,501
Scaffold L504
Number of contigs32
Contig N50166,846
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,954,043301,953,662167,50120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 = CIP 76.13Lactobacillus acidophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000786395.1Lactobacillus acidophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000786395.1Lactobacillus acidophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7699.60
Best-match type99.9999.7699.60

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna