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ASM143540v1

Organism name:
Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 20021
BioSample:
SAMN02369512
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001435405.1 (latest)
RefSeq assembly accession:
GCF_001435405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZCQ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 579171 [UID] 2582828 [GenBank] 2680988 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 635 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,949,099
Total ungapped length2,941,717
Gaps between scaffolds0
Number of scaffolds38
Scaffold N50149,321
Scaffold L508
Number of contigs74
Contig N5074,117
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)38

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,949,099382,941,717149,321360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425Lacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002849515.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002849515.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9798.86
Best-match type99.9999.9798.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna