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ASM143579v1

Organism name:
Lactobacillus delbrueckii subsp. indicus DSM 15996 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15996
BioSample:
SAMN02369368
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001435795.1 (latest)
RefSeq assembly accession:
GCF_001435795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZFL01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 579341 [UID] 2583188 [GenBank] 2681328 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,863,572
Total ungapped length1,863,085
Gaps between scaffolds0
Number of scaffolds139
Scaffold N5051,275
Scaffold L5012
Number of contigs149
Contig N5048,113
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,863,5721391,863,08551,275100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. indicus DSM 15996Lactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001908415.1Lactobacillus delbrueckii subsp. indicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001908415.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9899.8191.97
Best-match type99.9899.8191.97

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna