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ASM143748v1

Organism name:
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 26046
BioSample:
SAMN02797789
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001437485.1 (latest)
RefSeq assembly accession:
GCF_001437485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQCG01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 580181 [UID] 2584908 [GenBank] 2680848 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,749,240
Total ungapped length1,749,208
Gaps between scaffolds0
Number of scaffolds134
Scaffold N5064,087
Scaffold L5010
Number of contigs135
Contig N5056,583
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)134

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,749,2401341,749,20864,08710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046Lactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001888925.1Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001888925.1Lactobacillus delbrueckiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.5591.12
Best-match type99.9898.5591.12

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna