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ASM146977v1

Organism name:
Lactobacillus delbrueckii subsp. bulgaricus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MN-BM-F01
BioSample:
SAMN04309302
BioProject:
PRJNA304935
Submitter:
Inner Mongolia Mengniu Dairy (Group) CO., LTD
Date:
2015/12/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001469775.1 (latest)
RefSeq assembly accession:
GCF_001469775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Portal HGAP assembly v. 3 or June-2015
Genome coverage:
630x
Sequencing technology:
PacBio

IDs: 596401 [UID] 2727198 [GenBank] 2847718 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 07:52:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,979
CDSs (total)::1,864
Genes (coding)::1,698
CDSs (with protein)::1,698
Genes (RNA)::115
rRNAs::8, 8, 8 (5S, 16S, 23S)
complete rRNAs::8, 8, 8 (5S, 16S, 23S)
tRNAs::88
ncRNAs::3
Pseudo Genes (total)::166
CDSs (without protein)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::96 of 166
Pseudo Genes (incomplete)::73 of 166
Pseudo Genes (internal stop)::49 of 166
Pseudo Genes (multiple problems)::46 of 166
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,875,071
Total ungapped length1,875,071
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001469795.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP013610.1=NZ_CP013610.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,875,071

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. bulgaricusLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000056065.1Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000056065.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4293.1193.61
Best-match type99.4293.1193.61

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna