U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM152884v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 14074
BioSample:
SAMD00018762
BioProject:
PRJDB3000
Submitter:
National Institute of Technology and Evaluation
Date:
2016/01/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001528845.1 (latest)
RefSeq assembly accession:
GCF_001528845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCNU01
Assembly method:
newbler v. 2.6
Genome coverage:
83x
Sequencing technology:
454 GS-FLX Titanium; Illumina MiSeq

IDs: 625781 [UID] 2806888 [GenBank] 2823828 [RefSeq]

See Genome Information for Burkholderia cepacia

Pathogen Detection Resources

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment



Strain NBRC 14074 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length8,486,058
Total ungapped length8,486,058
Number of contigs110
Contig N50173,463
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)110

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced8,486,0581108,486,058173,46300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000473485.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000473485.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9798.55
Best-match type99.9999.9798.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna