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ASM170431v1

Organism name:
Lactiplantibacillus plantarum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: KP
BioSample:
SAMN04346869
BioProject:
PRJNA306257
Submitter:
University of Alberta
Date:
2016/08/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001704315.1 (latest)
RefSeq assembly accession:
GCF_001704315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio v. RS II
Genome coverage:
12.0
Sequencing technology:
PacBio

IDs: 781111 [UID] 3382668 [GenBank] 3409798 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

There are 1248 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria/DNA available from Dr.Edan Foley, University of Alberta, Medical Microbiology and Immunology, 6-71 HMRC

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 13:16:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,595
CDSs (total)::3,488
Genes (coding)::3,430
CDSs (with protein)::3,430
Genes (RNA)::107
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::87
ncRNAs::4
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::31 of 58
Pseudo Genes (incomplete)::24 of 58
Pseudo Genes (internal stop)::21 of 58
Pseudo Genes (multiple problems)::14 of 58
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,692,742
Total ungapped length3,692,742
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001704325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP013749.1=NZ_CP013749.1
Plasmid unnamed1CP013750.1=NZ_CP013750.1
Plasmid unnamed2CP013751.1=NZ_CP013751.1
Plasmid unnamed3CP013752.1=NZ_CP013752.1

Assembly statistics

MoleculeTotal
Length
All3,692,742
Chromosome 3,418,468
Plasmid unnamed1127,346
Plasmid unnamed278,406
Plasmid unnamed368,522

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus plantarumLactiplantibacillus plantarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3583.2994.63
Best-match type99.3583.2994.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna