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ASM171839v1

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: INT3-BP177
BioSample:
SAMN03449179
BioProject:
PRJNA279182
Submitter:
Northern Arizona University
Date:
2016/09/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001718395.1 (latest)
RefSeq assembly accession:
GCF_001718395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.0
Genome coverage:
50x
Sequencing technology:
PacBio

IDs: 790271 [UID] 3432688 [GenBank] 3433828 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 13:42:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,650
CDSs (total)::6,563
Genes (coding)::6,482
CDSs (with protein)::6,482
Genes (RNA)::87
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::81
CDSs (without protein)::81
Pseudo Genes (ambiguous residues)::0 of 81
Pseudo Genes (frameshifted)::26 of 81
Pseudo Genes (incomplete)::68 of 81
Pseudo Genes (internal stop)::10 of 81
Pseudo Genes (multiple problems)::21 of 81
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,337,382
Total ungapped length7,337,382
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001718405.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP013375.1=NZ_CP013375.1
Chromosome 2CP013376.1=NZ_CP013376.1

Assembly statistics

MoleculeTotal
Length
All7,337,382
Chromosome 13,728,457
Chromosome 23,608,925

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001411495.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6387.3074.44
Best-match type97.6387.3074.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna