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ASM171881v1

Organism name:
Burkholderia vietnamiensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HI2297
BioSample:
SAMN03449410
BioProject:
PRJNA279182
Submitter:
Northern Arizona University
Date:
2016/09/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001718815.1 (latest)
RefSeq assembly accession:
GCF_001718815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.0
Genome coverage:
50x
Sequencing technology:
PacBio

IDs: 790421 [UID] 3433028 [GenBank] 3433788 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

There are 213 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 13:30:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,081
CDSs (total)::5,993
Genes (coding)::5,880
CDSs (with protein)::5,880
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::113
CDSs (without protein)::113
Pseudo Genes (ambiguous residues)::0 of 113
Pseudo Genes (frameshifted)::38 of 113
Pseudo Genes (incomplete)::100 of 113
Pseudo Genes (internal stop)::9 of 113
Pseudo Genes (multiple problems)::32 of 113
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,764,532
Total ungapped length6,764,532
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001718825.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP013439.1=NZ_CP013439.1
Chromosome 2CP013440.1=NZ_CP013440.1
Chromosome 3CP013441.1=NZ_CP013441.1

Assembly statistics

MoleculeTotal
Length
All6,764,532
Chromosome 13,308,896
Chromosome 22,215,292
Chromosome 31,240,344

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensisBurkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1693.2791.03
Best-match type99.1693.2791.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna