U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM194178v1

Organism name:
Limosilactobacillus fermentum (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SNUV175
BioSample:
SAMN06174220
BioProject:
PRJNA358449
Submitter:
KoBioLabs, Inc.
Date:
2017/01/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001941785.1 (latest)
RefSeq assembly accession:
GCF_001941785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
276.0x
Sequencing technology:
PacBio

IDs: 946581 [UID] 3959758 [GenBank] 3969928 [RefSeq]

See Genome Information for Limosilactobacillus fermentum

There are 347 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from KoBioLabs, Inc.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/14/2023 01:42:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,337
CDSs (total)::2,261
Genes (coding)::2,166
CDSs (with protein)::2,166
Genes (RNA)::76
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::95
CDSs (without protein)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::35 of 95
Pseudo Genes (incomplete)::49 of 95
Pseudo Genes (internal stop)::31 of 95
Pseudo Genes (multiple problems)::19 of 95
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,272,328
Total ungapped length2,272,328
Total number of chromosomes and plasmids4

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001941795.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019030.1=NZ_CP019030.1
Plasmid pSNU175-2CP019031.1=NZ_CP019031.1
Plasmid pSNU175-3CP019032.1=NZ_CP019032.1
Plasmid pSNU175-4CP019033.1=NZ_CP019033.1

Assembly statistics

MoleculeTotal
Length
All2,272,328
Chromosome 2,176,678
Plasmid pSNU175-233,413
Plasmid pSNU175-333,071
Plasmid pSNU175-429,166

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Limosilactobacillus fermentumLimosilactobacillus fermentum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005341425.1Limosilactobacillus fermentumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1976.5991.35
Best-match type99.1976.5991.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna