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ASM195313v1

Organism name:
Lactobacillus delbrueckii subsp. bulgaricus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 20080
BioSample:
SAMN06046524
BioProject:
PRJNA354491
Submitter:
Korea University
Date:
2017/01/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001953135.1 (latest)
RefSeq assembly accession:
GCF_001953135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio SMRT Analysis v. v2.3
Expected final version:
yes
Genome coverage:
192.0x
Sequencing technology:
PacBio

IDs: 952741 [UID] 3986568 [GenBank] 3991268 [RefSeq]

See Genome Information for Lactobacillus delbrueckii

There are 572 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 01:34:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,993
CDSs (total)::1,868
Genes (coding)::1,695
CDSs (with protein)::1,695
Genes (RNA)::125
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::95
ncRNAs::3
Pseudo Genes (total)::173
CDSs (without protein)::173
Pseudo Genes (ambiguous residues)::0 of 173
Pseudo Genes (frameshifted)::112 of 173
Pseudo Genes (incomplete)::71 of 173
Pseudo Genes (internal stop)::50 of 173
Pseudo Genes (multiple problems)::53 of 173
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,868,180
Total ungapped length1,868,180
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001953145.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019120.1=NZ_CP019120.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,868,180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactobacillus delbrueckii subsp. bulgaricusLactobacillus delbrueckii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000056065.1Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000056065.1Lactobacillus delbrueckiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4293.6293.78
Best-match type99.4293.6293.78

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna