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ASM198893v1

Organism name:
Lacticaseibacillus rhamnosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: BFE5264
BioSample:
SAMN04404358
BioProject:
PRJNA308635
Submitter:
AtoGen CO., Ltd.
Date:
2017/02/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001988935.1 (latest)
RefSeq assembly accession:
GCF_001988935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT analysis v. e.e.0 HGAP.2
Expected final version:
no
Genome coverage:
40.0x
Sequencing technology:
PacBio

IDs: 996911 [UID] 4094128 [GenBank] 4103008 [RefSeq]

See Genome Information for Lacticaseibacillus rhamnosus

There are 635 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria and DNA availabble from AtoGen Co., Ltd.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/11/2023 02:06:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,981
CDSs (total)::2,903
Genes (coding)::2,795
CDSs (with protein)::2,795
Genes (RNA)::78
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::42 of 108
Pseudo Genes (incomplete)::59 of 108
Pseudo Genes (internal stop)::24 of 108
Pseudo Genes (multiple problems)::13 of 108
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,114,755
Total ungapped length3,114,755
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001988945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014201.1=NZ_CP014201.1
Plasmid unnamedCP014202.1=NZ_CP014202.1

Assembly statistics

MoleculeTotal
Length
All3,114,755
Chromosome 3,068,152
Plasmid unnamed46,603

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lacticaseibacillus rhamnosusLacticaseibacillus rhamnosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900636965.1Lacticaseibacillus rhamnosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.6283.5687.10
Best-match type97.6283.5687.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna