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ASM220908v2

Organism name:
Burkholderia cepacia (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_345
BioSample:
SAMN06173358
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2018/03/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002209085.2 (latest)
RefSeq assembly accession:
GCF_002209085.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 2.3.0, HGAP v. 3.0
Genome coverage:
333.327x
Sequencing technology:
PacBio; Illumina

IDs: 1642871 [UID] 6269698 [GenBank] 6305218 [RefSeq]

See Genome Information for Burkholderia cepacia

There are 324 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/18/2023 04:06:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,907
CDSs (total)::7,813
Genes (coding)::7,694
CDSs (with protein)::7,694
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::119
CDSs (without protein)::119
Pseudo Genes (ambiguous residues)::0 of 119
Pseudo Genes (frameshifted)::45 of 119
Pseudo Genes (incomplete)::99 of 119
Pseudo Genes (internal stop)::19 of 119
Pseudo Genes (multiple problems)::37 of 119
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,569,854
Total ungapped length8,569,854
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002209095.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP022083.2=NZ_CP022083.2
Chromosome 2CP022084.2=NZ_CP022084.2
Chromosome 3CP022082.2=NZ_CP022082.2
Plasmid unnamed1CP022081.2=NZ_CP022081.2

Assembly statistics

MoleculeTotal
Length
All8,569,854
Chromosome 13,779,906
Chromosome 23,397,795
Chromosome 31,187,984
Plasmid unnamed1204,169

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia cepaciaBurkholderia cepacia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001411495.1Burkholderia cepacia ATCC 25416type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001411495.1Burkholderia cepaciatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0099.58
Best-match type99.99100.0099.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna