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ASM221188v1

Organism name:
Lactiplantibacillus pentosus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SLC13
BioSample:
SAMN07267280
BioProject:
PRJNA391376
Submitter:
National Yang Ming University
Date:
2017/06/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002211885.1 (latest)
RefSeq assembly accession:
GCF_002211885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
50.1x
Sequencing technology:
PacBio

IDs: 1142351 [UID] 4640618 [GenBank] 4645038 [RefSeq]

See Genome Information for Lactiplantibacillus pentosus

There are 102 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Tony J. Fang.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 01:57:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,243
CDSs (total)::3,155
Genes (coding)::3,097
CDSs (with protein)::3,097
Genes (RNA)::88
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::59
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 59
Pseudo Genes (frameshifted)::31 of 59
Pseudo Genes (incomplete)::19 of 59
Pseudo Genes (internal stop)::14 of 59
Pseudo Genes (multiple problems)::6 of 59
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,583,008
Total ungapped length3,583,008
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002211895.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022130.1=NZ_CP022130.1
Plasmid pSLC13CP022131.1=NZ_CP022131.1

Assembly statistics

MoleculeTotal
Length
All3,583,008
Chromosome 3,520,510
Plasmid pSLC1362,498

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus pentosusLactiplantibacillus pentosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007991835.1Lactiplantibacillus pentosustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007991835.1Lactiplantibacillus pentosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1083.8784.84
Best-match type98.1083.8784.84

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna