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ASM228573v1

Organism name:
Streptococcus suis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ISU2812
BioSample:
SAMN04956520
BioProject:
PRJNA320741
Submitter:
USDA-ARS
Date:
2017/09/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002285735.1 (latest)
RefSeq assembly accession:
GCF_002285735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
smrtanalysis v. 2.3.0; CANU v. 1.3
Genome coverage:
334x
Sequencing technology:
PacBio; Illumina

IDs: 1189311 [UID] 4989528 [GenBank] 13396918 [RefSeq]

See Genome Information for Streptococcus suis

There are 6015 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Tracy L. Nicholson, United States Department of Agriculture, Agricultural Research Service, National Animal Disease Center, 1920 Dayton Ave. Bldg 24, P.O. Box 70, Ames, Iowa, 50010 United States of America.
The annotation was added by the NCBI ... Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/11/2023 00:24:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,457
CDSs (total)::2,384
Genes (coding)::2,256
CDSs (with protein)::2,256
Genes (RNA)::73
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::128
CDSs (without protein)::128
Pseudo Genes (ambiguous residues)::0 of 128
Pseudo Genes (frameshifted)::51 of 128
Pseudo Genes (incomplete)::77 of 128
Pseudo Genes (internal stop)::30 of 128
Pseudo Genes (multiple problems)::24 of 128
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,583,345
Total ungapped length2,583,345
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002285745.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP017092.1=NZ_CP017092.1
Plasmid pISU2812CP017093.1=NZ_CP017093.1

Assembly statistics

MoleculeTotal
Length
All2,583,345
Chromosome 2,577,759
Plasmid pISU28125,586

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus suisStreptococcus suis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475585.1Streptococcus suistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475585.1Streptococcus suistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.2268.7089.46
Best-match type96.2268.7089.46

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna